Source: zalign
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
XSBC-Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>,
           Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 9),
               autotools-dev,
               libopenmpi-dev,
               dh-autoreconf
Standards-Version: 3.9.6
Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/zalign/trunk
Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/zalign/trunk/
Homepage: https://launchpad.net/zalign

Package: zalign
Architecture: any
Depends: ${shlibs:Depends},
         ${misc:Depends}
Description: parallel local alignment of biological sequences
 zAlign is a local sequence aligner, especially intended for use with
 large biological DNA sequences, with more than 1Mbp (Millions of base
 pairs). It uses the Smith-Waterman exact algorithm with affine gap cost
 function to perform this task.
 .
 zAlign can be used both in distributed (clusters, for
 example) or standalone environments. Currently it has
 been tested on Linux and Sun Solaris, using both the MPICH
 (http://www.mcs.anl.gov/research/projects/mpi/mpich1/) and OpenMPI
 (http://www.open-mpi.org/) implementations. Ports for other Unix-like
 environments are highly considered.
