
12/07/2009 KDD: Commits cherry-picked from the trilinos-release-10-0-branch to the master.  

1384644523c7a78c241ccf06f8072f919f4004c4 - K Devine, Thu Dec 3 12:46:52 2009 -0700 : Fixed help comment for exodus/nemesis
b850b0389b24e7bd35ab8d2511bf3c3f2089b459 - K Devine, Thu Dec 3 12:46:52 2009 -0700 : Moved inclusion of exodus header files after macro indicating their inclusion
10c24371d463ab7e09a135b9e1b42b5d358e99f8 - K Devine, Thu Dec 3 12:46:51 2009 -0700 : Moved inclusion of exodus header files after definition of macro signalling their inclusion.
c2d8a50701770b09144a7200b88ab3032ac456bd - K Devine, Mon Nov 23 09:29:09 2009 -0700 : Fixes to autotools builds when --disable-fortran.
19dedb775814e3d11f959d7bfce9964272b56cfb - Karen D. Devine, Thu Nov 12 23:26:24 2009 +0000 :      SUMMARY:  Adding Fortran special cases to CMake.                NAG, PGI and LAHEY are in this commit (but not tested).
2f4dd7367146c3f64c710f84c829c38bdcc60310 - Karen D. Devine, Thu Nov 12 22:08:46 2009 +0000 :      SUMMARY:  All those autotools changes and I broke only one thing in CMake.
44a4ec766ae0542b56c3a3fefea5fa84f48c9632 - Karen D. Devine, Thu Nov 12 21:04:37 2009 +0000 :      SUMMARY:  Fixed a typo in F90 module file case test.
0c17ad7c4a338df9cf91ba6eb345260960e85757 - Karen D. Devine, Thu Nov 12 18:41:15 2009 +0000 :      SUMMARY:  Several changes to address remaining autotools bugs for                F90 builds (identified by Bill Mitchell).
6d7e65fc21daa5c7b4e82c44a0f5dd2de04eb65f - Karen D. Devine, Thu Nov 12 05:04:31 2009 +0000 :      SUMMARY:  Check case (upper, lower) of module file names generated by F90.                Set a flag and modify names to indicate whether to include                lowercase or uppercase module names.                (Needed by ABSOFT and, perhaps, SGI F90 compilers.)
2461bffe5ca1272922e65035220bb81b224906a4 - Karen D. Devine, Thu Nov 12 03:15:45 2009 +0000 :      SUMMARY:  Removed test for F77; Zoltan doesn't need it.                Made MPI_FC logic match MPI_CC logic.
a6daffe9dd16c73d36fbc397b6f8cf4b7115b6d0 - Lee Ann Riesen, Wed Nov 11 18:43:56 2009 +0000 :      SUMMARY:  Changing config_mpi M4 macro so that if the full path for CC and/or CXX is provided by the caller, and the files exist, these will be used from MPI_CC and MPI_CXX.  The reason is that AC_PATH_PROG doesn't find these, even when "." is in the path.
263ba43a26be97a0ac8a0f9d329b33c4fa2bda0e - Karen D. Devine, Wed Nov 11 04:24:12 2009 +0000 :      SUMMARY:  Remove compiler warning for unset variable
0997d6a18e3c5cbff9d1630a82c1c217f0b85b88 - Karen D. Devine, Wed Nov 11 04:17:42 2009 +0000 :      SUMMARY:  Forgot to add PGI/Lahey flags to CFLAGS
bfd205b45b06cca75519845e14691352306cdbf2 - Karen D. Devine, Wed Nov 11 04:12:59 2009 +0000 :      SUMMARY:  Adding tests for PGI and Lahey F90 compilers.
37db96de38b2760fd37c3007148ec41ec68a5ce7 - Karen D. Devine, Wed Nov 11 03:50:17 2009 +0000 :      SUMMARY:  Adding test for PGI F90 compiler.
b6dcfc12c248f07e5f1d686f0ed5fbba60c4eecb - Karen D. Devine, Wed Nov 11 02:57:40 2009 +0000 :      SUMMARY:  Automatic detection of F90 compiler is correctly working now.                Also, FCFLAGS is passed to compilation of *.f files, without                duplicate flags (as reported by Bill Mitchell).
5f550a2f8c839df73c11fd08806f1e47fcd9c72f - Karen D. Devine, Tue Nov 10 21:17:59 2009 +0000 :      SUMMARY:  Updated sample configuration scripts. DOCUMENTATION ONLY
218282abd229696de0dd9a7f72b6405002f1281f - Karen D. Devine, Tue Nov 10 20:57:30 2009 +0000 :      SUMMARY:  Removing F77 and FFLAGS as compilation options.
5b6eac461771490ed96335fe294c674e4061f0b6 - Lee Ann Riesen, Tue Nov 10 20:09:49 2009 +0000 :      SUMMARY:  moving bug fix from trunk to v10 release
d3d1b91ea0132a26da5e56f3a87940ac16ed7916 - Karen D. Devine, Fri Nov 6 20:30:04 2009 +0000 :      SUMMARY:  DOCUMENTATION ONLY:  Fixed a link.
39a72903df36b5f20c89966431b8c784848953b9 - Karen D. Devine, Thu Nov 5 23:14:57 2009 +0000 :      SUMMARY:  Removed unneeded flags from sample configuration scripts.
cd25663fbfc17d17296d326a5d8acfa3dbcd7290 - Lee Ann Riesen, Thu Nov 5 22:12:51 2009 +0000 :      SUMMARY:  adding a new m4 file in config to find the mpi compilers, I'm leaving the original in case there is a problem.  I tested this quite a bit, but there are many different MPI arguments.  This checkin ensures that Zoltan's configure continues to work the way Aleph wants it to.
04696dc389ee5be4f583fe7d139170acee154d1f - Karen D. Devine, Thu Nov 5 20:27:57 2009 +0000 :      SUMMARY:  Minor compiler fixes recommended by Bill Mitchell.
c22214bde19cc5e120cc7fc63e20deaa6967512a - Karen D. Devine, Tue Nov 3 17:50:20 2009 +0000 :      SUMMARY:  Updated to make work with purify.
486e42161e8c5432aecf1f6ec73f0e2c3676d2b4 - Karen D. Devine, Thu Oct 29 17:58:21 2009 +0000 :      SUMMARY:  Updated documentation as suggested by Bill Mitchell.                DOCUMENTATION ONLY.
2471b943abf15b2c5bb2ce5110f02315edefe5e3 - Karen D. Devine, Thu Oct 29 17:34:03 2009 +0000 :      SUMMARY:  More fixes suggested by Bill Mitchell for F90 compilation.
cc6cea0546800876b1225f9ad33d47b4e815d9a9 - Karen D. Devine, Thu Oct 29 16:11:02 2009 +0000 :      SUMMARY:  Added --with-incdirs to all compiler flags (not just CPPFLAGS).
bca10ea068bc677747206d93f0cc5c552464c7a7 - Karen D. Devine, Thu Oct 29 15:40:32 2009 +0000 :      SUMMARY:  Fixed improper arguments to Zfw_Invert_Lists and Zfw_Compute_Destinations
7929468ae2ba13a397301443933ecdf57efe3056 - Erik G. Boman, Tue Oct 20 22:44:12 2009 +0000 :      SUMMARY:  Added link to fixed vertex query functions
04bab4a2d67bc3815946faf5de26958f8977d426 - Karen D. Devine, Fri Oct 16 14:08:24 2009 +0000 :      SUMMARY:  Minor fix to get FAST/EXACT nightly builds to work for F90
bf94764977b44107c5bdddab06a1a2a8dfa38274 - Michael M. Wolf, Thu Oct 8 22:42:04 2009 +0000 :      SUMMARY: Small change to C++ Order function
24cbe9053e2c73ce794e0e2a1ca777153d4f6127 - Michael M. Wolf, Thu Oct 8 22:15:20 2009 +0000 :      SUMMARY: Very small corrections to Order documentation
84d55d40ebbd2dbd2a51c5e656044c1465ff17a5 - Karen D. Devine, Thu Oct 8 18:36:35 2009 +0000 :      SUMMARY:  Changed intent of num_gid_entries in Zoltan_Order and Zoltan_Color from out to in.
057d88a447cc53f267d5b76afa515108b6c07080 - Karen D. Devine, Wed Oct 7 21:01:31 2009 +0000 :      SUMMARY:  Added fortran module files to clean target.                Bug found by Bill Mitchell
7924b5878536252f3b6c06101660cbb2cbcef644 - Karen D. Devine, Wed Oct 7 20:38:42 2009 +0000 :      SUMMARY:  Small change to autotools configuration to include                $srcdir/src/fort on as an include path for F90 builds.
ab55e6c4872d016be3e5127366b3410a531790f3 - Cedric Chevalier, Wed Oct 7 15:31:16 2009 +0000 :      SUMMARY: Port scotch answer file from the trunk
aecaa1c8943bdfbff8d5a4331056dbaac9ead867 - Karen D. Devine, Mon Oct 5 18:57:30 2009 +0000 :      SUMMARY:  Added 3.2 distribution
cadf7e50e5f5b6c7f49b2e05d16eeb6736af824b - Brent M. Perschbacher, Mon Oct 5 18:24:14 2009 +0000 :      SUMMARY:  fix issue with fortran/c interface verify check
052a0955e0ee997a7fbe4920beef08bf2774e4e5 - Cedric Chevalier, Fri Oct 2 21:37:16 2009 +0000 :      SUMMARY: Fix handling of serial scotch ordering parameters

----------------------------------
12/07/2009  KDD: The following commits appeared to have no effect when I cherry-picked them.  
12/07/2009  KDD: Perhaps the changes had already been transferred from the main trunk to the release.  

bf94764977b44107c5bdddab06a1a2a8dfa38274 - Michael M. Wolf, Thu Oct 8 22:42:04 2009 +0000 :      SUMMARY: Small change to C++ Order function
ab55e6c4872d016be3e5127366b3410a531790f3 - Cedric Chevalier, Wed Oct 7 15:31:16 2009 +0000 :      SUMMARY: Port scotch answer file from the trunk
cadf7e50e5f5b6c7f49b2e05d16eeb6736af824b - Brent M. Perschbacher, Mon Oct 5 18:24:14 2009 +0000 :      SUMMARY:  fix issue with fortran/c interface verify check

----------------------------------
12/07/2009 KDD:  Files modified by the merge:

packages/zoltan/CMakeLists.txt
packages/zoltan/Makefile.in
packages/zoltan/ReleaseBranchMergedCommits.txt
packages/zoltan/SampleConfigurationScripts/linux_with_purify_zoltan_only
packages/zoltan/SampleConfigurationScripts/linux_zoltan_dist
packages/zoltan/SampleConfigurationScripts/linux_zoltan_only
packages/zoltan/SampleConfigurationScripts/mac_osX_no_fortran
packages/zoltan/SampleConfigurationScripts/mac_osX_zoltan_only
packages/zoltan/cmake/Zoltan_config.h.in
packages/zoltan/config/ax_f90_module_case.m4
packages/zoltan/config/generate-makeoptions.pl
packages/zoltan/config/replace-install-prefix.pl
packages/zoltan/config/tac_arg_with_incdirs.m4
packages/zoltan/config/wk_fc_get_vendor.m4
packages/zoltan/config/zac_arg_config_mpi.m4
packages/zoltan/configure
packages/zoltan/configure.ac
packages/zoltan/doc/Zoltan_html/Zoltan_download.html
packages/zoltan/doc/Zoltan_html/ug_html/ug_alg_parmetis.html
packages/zoltan/doc/Zoltan_html/ug_html/ug_alg_phg.html
packages/zoltan/doc/Zoltan_html/ug_html/ug_interface_order.html
packages/zoltan/doc/Zoltan_html/ug_html/ug_order.html
packages/zoltan/doc/Zoltan_html/ug_html/ug_usage.html
packages/zoltan/example/C/Makefile.in
packages/zoltan/example/CPP/Makefile.in
packages/zoltan/example/Makefile.in
packages/zoltan/siMPI/Makefile.in
packages/zoltan/siMPI/pyMPI/Makefile.in
packages/zoltan/siMPI/pyMPI/siMPI/Makefile.in
packages/zoltan/src/CMakeLists.txt
packages/zoltan/src/Makefile.am
packages/zoltan/src/Makefile.in
packages/zoltan/src/Utilities/Config/Config.linux64lampure
packages/zoltan/src/Utilities/Config/Config.mac64
packages/zoltan/src/driver/Makefile.in
packages/zoltan/src/driver/dr_const.h
packages/zoltan/src/driver/dr_exoII_io.c
packages/zoltan/src/driver/dr_exoII_ioCPP.cpp
packages/zoltan/src/driver/dr_loadbalCPP.cpp
packages/zoltan/src/driver_old/dr_exoII_io.c
packages/zoltan/src/fdriver/CMakeLists.txt
packages/zoltan/src/fdriver/Makefile.am
packages/zoltan/src/fdriver/Makefile.in
packages/zoltan/src/fdriver/farg_nagf90.f
packages/zoltan/src/fdriver/farg_nagf95.f
packages/zoltan/src/fdriver/fdr_param_file.f90
packages/zoltan/src/fdriver/lampmpi.f90
packages/zoltan/src/fort/cwrap.c
packages/zoltan/src/fort/cwrap_fmangle.h
packages/zoltan/src/fort/fwrap.f90
packages/zoltan/src/fort/makefile
packages/zoltan/src/include/Zoltan_config.h.in


12/11/2009
1355c7a3e8f404cf96074340d8d941b85771b776 - K Devine, Fri Dec 11 12:11:51 2009 -0
700 : Merge remote branch 'origin/trilinos-release-10-0-branch' into trilinos-re
lease-10-0-branch
95adaa96990289ddb52054c2423dc3e8d568fa84 - K Devine, Fri Dec 11 12:02:26 2009 -0
700 : Getting documentation and code in agreement on use of vtxedge_ptr in ZOLTA
N_HG_CS_FN.
50e0e265a1d0dc924aa011fc4cf3ce24d1e56574 - K Devine, Thu Dec 10 13:23:28 2009 -0
700 : When NUM_GID_ENTRIES>1, ZOLTAN_HG_CS_FN returned incorrect values in vtxed
ge_ptr.
c21b84c5bb26dd03389868727772529c2a11c7d3 - K Devine, Thu Dec 10 13:10:40 2009 -0
700 : Removed noisy print statements.
46cab13997d5b4d487fe318b57cfe51bfb06f14d - K Devine, Thu Dec 10 12:57:34 2009 -0
700 : Fixed bugs in construction of hypergraphs when NUM_GID_ENTRIES>1.
276eaf227847586f0bfedc656f82ba7213b3f2a3 - K Devine, Thu Dec 10 12:48:39 2009 -0
700 : Added hypergraph callbacks to test mesh-partitioning model with exodus mes
h files.

519a66c536d0171471536d2d2f4183eb165327d0 - K Devine, Fri Dec 11 12:53:52 2009 -0700 : My notes on using git


2/1/2010

5bbf429e3a4cf9d2b7e56fe91d5f254a7bab78fe
fa6ad422837f77fd9c9136f2981242b0c69a2fd7

