Description: fixed missing headers in the source .
Author:      Alex Mestiashvili	<alex@biotec.tu-dresden.de>
Last-Update: 2011-02-19
--- transtermhp-2.0.7.orig/seq.cc
+++ transtermhp-2.0.7/seq.cc
@@ -5,6 +5,10 @@
 #include <cctype>
 #include <vector>
 #include <iomanip>
+#include <cstdlib>
+#include <string.h>
+#include <algorithm>
+#include <cstdio>
 
 #include "seq.h"
 #include "util.h"
--- transtermhp-2.0.7.orig/seq.h
+++ transtermhp-2.0.7/seq.h
@@ -4,6 +4,7 @@
 #ifndef SEQ_H
 #define SEQ_H
 #include <string>
+#include <cstdlib>
 #include <vector>
 #include <list>
 
--- transtermhp-2.0.7.orig/search.cc
+++ transtermhp-2.0.7/search.cc
@@ -10,6 +10,7 @@
 #include "seq.h"
 #include "ermolaeva-score.h"
 #include "util.h"
+#include <algorithm>
 
 int UWINDOW_SIZE = 6;
 int UWINDOW_REQUIRE = 3;
--- transtermhp-2.0.7.orig/analysis.cc
+++ transtermhp-2.0.7/analysis.cc
@@ -6,6 +6,7 @@
 #include <vector>
 #include <sstream>
 #include <cassert>
+#include <algorithm>
 #include "map-output.h"
 #include "conf.h"
 #include "seq.h"
