#!/usr/bin/make -f
# debian/rules file for ssake
# (C) Andreas Tille
# GPL

include /usr/share/dpkg/pkg-info.mk

examples=$(DEB_SOURCE)-examples

%:
	dh $@

BINDIR := $(CURDIR)/debian/$(DEB_SOURCE)/usr/bin
DOCDIR := $(CURDIR)/debian/$(examples)/usr/share/doc/$(DEB_SOURCE)

override_dh_install:
	dh_install
	cp -a SSAKE $(BINDIR)/ssake
	cp -a tools/TQS.py $(BINDIR)/tqs

override_dh_installexamples:
	dh_installexamples
	for sh in $(DOCDIR)/examples/*.sh ; do \
	    sed -i '1 i #!/bin/sh' $${sh} ; \
	done

ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
TESTDIR := $(shell mktemp -d)
override_dh_auto_test:
	cp -a test/* $(TESTDIR)
	cd $(TESTDIR) && $(CURDIR)/SSAKE -f Herpesvirus_3.60kb.reads.fa -m 16 -o 2 -r 0.6 -p 0 -t 0 -c 1 -w 5 -b myFirstSSAKErun
	rm -rf $(TESTDIR)
endif
