# supported distribution names are: Normal, LogNormal, Uniform, Exponential
# Modalities are: Mammo, Tomo, MRI

Scenario:
                                # use true for variable spreading
#    spread:                 true
    spread:                 false
    
    iterations:             1
    
                                # random generator behavior:      
                                # random, fixed, increasing
    generator:              fixed 
    
                                # initial seed unless using generator: random
    seed:                   1

                                # n cases to simulate
    cases:                  1000

        #      discount:              pairs of (increasing) 'begin-diam: cost'
        #   ref.age proportion  biop  specs (first diameter must be 0)
Costs:
    biop:       176   
    diameters:  0: 6438  20: 7128  50: 7701
    Discount:
        age:            50      
        proportion:      0

BreastDensities:

    #                bi-rad:  a      b      c      d
    ageGroup:    0  - 40     .05    .30    .48    .17
    ageGroup:    40 - 50     .06    .34    .47    .13
    ageGroup:    50 - 60     .08    .50    .37    .05
    ageGroup:    60 - 70     .15    .53    .29    .03
    ageGroup:    70 - *      .18    .54    .26    .02


Modalities:
   Mammo:
        costs:          64   

        #                default:
        systematicError:  0.1   

        Dose:           
          #            mean   spread    dist
          bi-rad: a     3       1       Normal
          bi-rad: b     3       1       Normal
          bi-rad: c     3       1       Normal
          bi-rad: d     3       1       Normal

         M: 
          #            proportion   spread      dist    
          bi-rad: a      .061        .021       Normal
          bi-rad: b      .163        .045       Normal
          bi-rad: c      .400        .106       Normal
          bi-rad: d      .826        .088       Normal

         Beta:
          #         mean    spread      dist
          nr: 1     -4.38    .002       Normal
          nr: 2       .49    .0005      Normal
          nr: 3     -1.34    .0074      Normal
          nr: 4     -7.18    .0340      Normal

        Specificity:
          #           range      proportion   spread  dist
          ageGroup:   0 - 40     .961         .005   Normal
          ageGroup:  40 - *      .965         .005   Normal

    Tomo:
        costs:         64   

        Dose:           
          #            mean   spread    dist
          bi-rad: a     3       1       Normal
          bi-rad: b     3       1       Normal
          bi-rad: c     3       1       Normal
          bi-rad: d     3       1       Normal

        Sensitivity:
          #           proportion    spread      dist
          bi-rad: a     .87          .05        Normal
          bi-rad: b     .84          .05        Normal
          bi-rad: c     .73          .05        Normal
          bi-rad: d     .65          .05        Normal

        Specificity:
          #           range     proportion   spread      dist
          ageGroup:   0 - 40      .961       .0025       Normal
          ageGroup:  40 - *       .965       .0025       Normal

    MRI:
        costs:          280
        #               proportion  spread      dist
        sensitivity:      .94        .005       Normal
        specificity:      .95        .005       Normal

Screening:

    # round: age    space separated modalities. 
    # subsequent ages must exceed the last age by at least 1
    # instead of specifying screening rounds by age it's also
    # possible to use a single
    #   round: none
    # specification, in which case no screening rounds are used.

    round:     50  Mammo 
    round:     52  Mammo 
    round:     54  Mammo 
    round:     56  Mammo 
    round:     58  Mammo 
    round:     60  Mammo 
    round:     62  Mammo 
    round:     64  Mammo 
    round:     66  Mammo 
    round:     68  Mammo 
    round:     70  Mammo 
    round:     72  Mammo 
    round:     74  Mammo 

    #                   proportion:
    attendanceRate:     .8     

Tumor:

    #       eta     beta    spread  dist. 
    beir7:  -2.0    0.51    0.32    Normal
    
    Growth:
        start:  5
                          # stdev       mean    spread  dist
        selfDetect:         .70         2.92    .084    Normal
               
        DoublingTime:  
            #                   stdev   mean  spread  dist.   
            ageGroup:  1 - 50    .61    4.38   .43    Normal     
            ageGroup: 50 - 70    .26    5.06   .17    Normal     
            ageGroup: 70 - *     .45    5.24   .23    Normal     

    Incidence:
        Normal:
            probability:    1
            stdDev:        21.1    
            #                   value   spread  distr.                    
            lifetimeRisk:         .226  .0053   Normal  
            meanAge:            72.9    .552    Normal 

        BRCA1:
            probability:    0
            stdDev:        16.51
            #                   value   spread  distr.                    
            lifetimeRisk:         .96
            meanAge:            53.9

         BRCA2:
            probability:    0
            stdDev:        16.51
            #                   value   spread  distr.                    
            lifetimeRisk:         .96
            meanAge:            53.9

    Survival:
        #              value        spread      dist:
        type:  a        .00004475   .000004392  Normal  
        type:  b       1.85867      .0420       Normal
        type:  c       -.271        .0101       Normal
        type:  d       2.0167       .0366       Normal
