#!/bin/sh
# autopkgtest check: run sepp, following example of the sepp tutorial file.
# (C) 2020 Pierre Gruet.
# Author: Pierre Gruet <pgtdebian@free.fr>

set -e

SOURCEDIR=$(pwd)
WORKDIR=$(mktemp -d)
trap "rm -rf $WORKDIR" 0 INT QUIT ABRT PIPE TERM

cp -r test/ $WORKDIR
cd $WORKDIR/test/unittest/data/

run_sepp.py -t mock/pyrg/sate.tre -r mock/pyrg/sate.tre.RAxML_info -a mock/pyrg/sate.fasta -f mock/pyrg/pyrg.even.fas
