Source: samtools
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Charles Plessy <plessy@debian.org>
Build-Depends: debhelper (>= 8), cdbs, libncurses5-dev, zlib1g-dev
Standards-Version: 3.9.2
Homepage: http://samtools.sourceforge.net
Vcs-Browser: http://git.debian.org/?p=debian-med/samtools.git
Vcs-Git: git://git.debian.org/debian-med/samtools.git

Package: samtools
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
Suggests: python
Description: processing sequence alignments in SAM and BAM formats
 Samtools is a set of utilities that manipulate nucleotide sequence alignments
 in the binary BAM format. It imports from and exports to the ascii SAM
 (Sequence Alignment/Map) format, does sorting, merging and indexing, and allows
 to retrieve reads in any regions swiftly. It is designed to work on a stream,
 and is able to open a BAM (not SAM) file on a remote FTP or HTTP server.

Package: libbam-dev
Architecture: any
Section: libdevel
Depends: ${shlibs:Depends}, ${misc:Depends}
Description: manipulates nucleotide sequence alignments in BAM or SAM format 
 The BAM library provides I/O and various operations on manipulating nucleotide
 sequence alignments in the BAM (Binary Alignment/Mapping) or SAM (Sequence
 Alignment/Map) format. It now supports importing from or exporting to SAM,
 sorting, merging, generating pileup, and quickly retrieval of reads overlapped
 with a specified region. 
