minscore = 0.000000, tmptmplen[im] = 0.000000, tmptmplen[jm] = 0.000000

ooSTEP-001:
len0 = 0.000000
 034
len1 = 0.000000
 035
minscore = 0.013444, tmptmplen[im] = 0.000000, tmptmplen[jm] = 0.000000

ooSTEP-002:
len0 = 0.013444
 020
len1 = 0.013444
 021
minscore = 0.014038, tmptmplen[im] = 0.000000, tmptmplen[jm] = 0.000000

ooSTEP-003:
len0 = 0.014038
 030
len1 = 0.014038
 031
minscore = 0.033471, tmptmplen[im] = 0.000000, tmptmplen[jm] = 0.000000

ooSTEP-004:
len0 = 0.033471
 008
len1 = 0.033471
 009
minscore = 0.056624, tmptmplen[im] = 0.033471, tmptmplen[jm] = 0.000000

ooSTEP-005:
len0 = 0.023153
 008
len1 = 0.056624
 010
minscore = 0.059506, tmptmplen[im] = 0.013444, tmptmplen[jm] = 0.000000

ooSTEP-006:
len0 = 0.046062
 020
len1 = 0.059506
 022
minscore = 0.083607, tmptmplen[im] = 0.000000, tmptmplen[jm] = 0.014038

ooSTEP-007:
len0 = 0.083607
 029
len1 = 0.069568
 030
minscore = 0.128565, tmptmplen[im] = 0.000000, tmptmplen[jm] = 0.000000

ooSTEP-008:
len0 = 0.128565
 014
len1 = 0.128565
 015
minscore = 0.147434, tmptmplen[im] = 0.000000, tmptmplen[jm] = 0.000000

ooSTEP-009:
len0 = 0.147434
 016
len1 = 0.147434
 017
minscore = 0.156655, tmptmplen[im] = 0.000000, tmptmplen[jm] = 0.000000

ooSTEP-010:
len0 = 0.156655
 004
len1 = 0.156655
 005
minscore = 0.177136, tmptmplen[im] = 0.000000, tmptmplen[jm] = 0.000000

ooSTEP-011:
len0 = 0.177136
 032
len1 = 0.177136
 033
minscore = 0.195758, tmptmplen[im] = 0.000000, tmptmplen[jm] = 0.000000

ooSTEP-012:
len0 = 0.195758
 023
len1 = 0.195758
 024
minscore = 0.265373, tmptmplen[im] = 0.056624, tmptmplen[jm] = 0.000000

ooSTEP-013:
len0 = 0.208748
 008
len1 = 0.265373
 012
minscore = 0.324165, tmptmplen[im] = 0.265373, tmptmplen[jm] = 0.000000

ooSTEP-014:
len0 = 0.058793
 008
len1 = 0.324165
 011
minscore = 0.350021, tmptmplen[im] = 0.000000, tmptmplen[jm] = 0.000000

ooSTEP-015:
len0 = 0.350021
 001
len1 = 0.350021
 002
minscore = 0.394261, tmptmplen[im] = 0.000000, tmptmplen[jm] = 0.000000

ooSTEP-016:
len0 = 0.394261
 027
len1 = 0.394261
 028
minscore = 0.420626, tmptmplen[im] = 0.000000, tmptmplen[jm] = 0.000000

ooSTEP-017:
len0 = 0.420626
 018
len1 = 0.420626
 019
minscore = 0.437074, tmptmplen[im] = 0.350021, tmptmplen[jm] = 0.156655

ooSTEP-018:
len0 = 0.087053
 001
len1 = 0.280418
 004
minscore = 0.441335, tmptmplen[im] = 0.437074, tmptmplen[jm] = 0.000000

ooSTEP-019:
len0 = 0.004261
 001
len1 = 0.441335
 003
minscore = 0.461762, tmptmplen[im] = 0.128565, tmptmplen[jm] = 0.147434

ooSTEP-020:
len0 = 0.333197
 014
len1 = 0.314327
 016
minscore = 0.558093, tmptmplen[im] = 0.059506, tmptmplen[jm] = 0.195758

ooSTEP-021:
len0 = 0.498587
 020
len1 = 0.362336
 023
minscore = 0.640329, tmptmplen[im] = 0.000000, tmptmplen[jm] = 0.000000

ooSTEP-022:
len0 = 0.640329
 025
len1 = 0.640329
 026
minscore = 0.659663, tmptmplen[im] = 0.558093, tmptmplen[jm] = 0.640329

ooSTEP-023:
len0 = 0.101570
 020
len1 = 0.019335
 025
minscore = 0.660624, tmptmplen[im] = 0.441335, tmptmplen[jm] = 0.000000

ooSTEP-024:
len0 = 0.219289
 001
len1 = 0.660624
 013
minscore = 0.664669, tmptmplen[im] = 0.660624, tmptmplen[jm] = 0.000000

ooSTEP-025:
len0 = 0.004045
 001
len1 = 0.664669
 006
minscore = 0.682960, tmptmplen[im] = 0.000000, tmptmplen[jm] = 0.000000

ooSTEP-026:
len0 = 0.682960
 034
len1 = 0.682960
 036
minscore = 0.691986, tmptmplen[im] = 0.664669, tmptmplen[jm] = 0.324165

ooSTEP-027:
len0 = 0.027317
 001
len1 = 0.367821
 008
minscore = 0.696783, tmptmplen[im] = 0.691986, tmptmplen[jm] = 0.000000

ooSTEP-028:
len0 = 0.004796
 001
len1 = 0.696783
 007
minscore = 0.727470, tmptmplen[im] = 0.177136, tmptmplen[jm] = 0.682960

ooSTEP-029:
len0 = 0.550335
 032
len1 = 0.044511
 034
minscore = 0.764264, tmptmplen[im] = 0.659663, tmptmplen[jm] = 0.394261

ooSTEP-030:
len0 = 0.104600
 020
len1 = 0.370003
 027
minscore = 0.776167, tmptmplen[im] = 0.083607, tmptmplen[jm] = 0.727470

ooSTEP-031:
len0 = 0.692560
 029
len1 = 0.048696
 032
minscore = 0.777130, tmptmplen[im] = 0.461762, tmptmplen[jm] = 0.764264

ooSTEP-032:
len0 = 0.315368
 014
len1 = 0.012866
 020
minscore = 0.782861, tmptmplen[im] = 0.777130, tmptmplen[jm] = 0.420626

ooSTEP-033:
len0 = 0.005732
 014
len1 = 0.362236
 018
minscore = 0.808919, tmptmplen[im] = 0.696783, tmptmplen[jm] = 0.776167

ooSTEP-034:
len0 = 0.112136
 001
len1 = 0.032752
 029
minscore = 0.832039, tmptmplen[im] = 0.808919, tmptmplen[jm] = 0.782861

ooSTEP-035:
len0 = 0.023120
 001
len1 = 0.049177
 014
>     1== M63632   1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
------------------------------MNGTEGD-----------------------
NF-YVP---------FSNKTG-------------LARSPYEYPQY---------------
-YLAEPWKYSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVL
FGF-TVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMG
NF-RFGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNP
NFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAA--------------------
------------------------------------------------------------
------------------------------------------------------------
----------------QQESASTQK---------AEKEVTRMVVLMVIGFLVCWVPYASV
AFYIFT-HQGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLC-----C
----GKNPLGD-DE-SG-ASTSKTEVSSV-STSPV-------------------------
-----------------------------------SPA----------------------
--
>     2== U22180   1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
------------------------------MNGTEGP-----------------------
NF-YVP---------FSNITG-------------VVRSPFEQPQY---------------
-YLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVF
GGF-TTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMS
NF-RFGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKP
EVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQ--------------------
------------------------------------------------------------
------------------------------------------------------------
----------------QQESATTQK---------AEKEVTRMVIIMVIFFLICWLPYASV
AMYIFT-HQGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLC-----C
----GKNPLGD-DE-AS-ATASKTE------TSQV-------------------------
-----------------------------------APA----------------------
--
>     3== M92038   1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
------------------------------MNGTEGI-----------------------
NF-YVP---------MSNKTG-------------VVRSPFEYPQY---------------
-YLAEPWKYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMAC
FGF-TVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMG
NF-RFSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNP
DYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQ--------------------
------------------------------------------------------------
------------------------------------------------------------
----------------QQESATTQK---------AEKEVTRMVILMVLGFMLAWTPYAVV
AFWIFT-NKGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTIC-----C
----GKNPFGD-EDVSSTVSQSKTEVSSV-SSSQV-------------------------
-----------------------------------SPA----------------------
--
>     4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
------------------------------MNGTEGK-----------------------
NF-YVP---------MSNRTG-------------LVRSPFEYPQY---------------
-YLAEPWQFKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVC
FGF-TVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMG
SF-KFSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNP
DYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQ--------------------
------------------------------------------------------------
------------------------------------------------------------
----------------QQDSASTQK---------AEREVTKMVILMVFGFLIAWTPYATV
AAWIFF-NKGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIF-----C
----GKNPLGD-DE-SSTVSTSKTE------VSSV-------------------------
-----------------------------------SPA----------------------
--
>     5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
------------------------------MNGTEGN-----------------------
NF-YVP---------LSNRTG-------------LVRSPFEYPQY---------------
-YLAEPWQFKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVC
FGF-TVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMG
SF-KFSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNP
EYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQ--------------------
------------------------------------------------------------
------------------------------------------------------------
----------------QQDSASTQK---------AEREVTKMVILMVLGFLVAWTPYATV
AAWIFF-NKGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLF-----C
----GKNPLGD-EE-SSTVSTSKTE------VSSV-------------------------
-----------------------------------SPA----------------------
--
>     6== L11864   1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
------------------------------MKQVPEFH---------------------E
DF-YIPIPL-----DINNLS---------------AYSPFLVPQD---------------
-HLGNQGIFMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAI
FGS-PLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLG
NF-TFKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNN
KYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKA--------------------
------------------------------------------------------------
------------------------------------------------------------
----------------QADSASTQK---------AEREVTKMVVVMVLGFLVCWAPYASF
SLWIVS-HRGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMMKMV------C
----GKNIEED-EA----STSSQVT-----QVSSV-------------------------
-----------------------------------APEK---------------------
--
>     7== M13299   1 human BCP <>[Science232(4747),193-202'86]
------------------------------MRKMSEE-----------------------
EF-YL----------FKNIS---------------SVGPWDGPQY---------------
-HIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCI
FSV-FPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFG
NF-RFSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGT
KYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQ--------------------
------------------------------------------------------------
------------------------------------------------------------
----------------QQESATTQK---------AEREVSRMVVVMVGSFCVCYVPYAAF
AMYMVN-NRNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV------C
----GKAM--T-DE-SDTCSSQKTEVSTV-SSTQV-------------------------
-----------------------------------GPN----------------------
--
>     8=opsin, greensensitive  human (fragment) S07060
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------DLAETV
IAS-TISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFG
NV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSS
YPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQ--------------------
------------------------------------------------------------
------------------------------------------------------------
----------------QKESESTQK---------AEKEVTRMVVVMVLAFC---------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--
>     9== K03494   1 human GCP <>[Science232(4747),193-202'86]
MAQQ------WSLQRLA-----GRHPQDSYEDSTQSS-----------------------
IF-TYT---------NSNST----------------RGPFEGPNY---------------
-HIAPRWVYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETV
IAS-TISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFG
NV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSS
YPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQ--------------------
------------------------------------------------------------
------------------------------------------------------------
----------------QKESESTQK---------AEKEVTRMVVVMVLAFCFCWGPYAFF
ACFAAA-NPGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLF-------
----GKKV--D-DG-SELSSASKTEVSSV---SSV-------------------------
-----------------------------------SPA----------------------
--
>    10== Z68193   1 human Red Opsin <>[]
MAQQ------WSLQRLA-----GRHPQDSYEDSTQSS-----------------------
IF-TYT---------NSNST----------------RGPFEGPNY---------------
-HIAPRWVYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETV
IAS-TISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFG
NV-RFDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSS
YPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQ--------------------
------------------------------------------------------------
------------------------------------------------------------
----------------QKESESTQK---------AEKEVTRMVVVMIFAYCVCWGPYTFF
ACFAAA-NPGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLF-------
----GKKV--D-DG-SELSSASKTEVSSV---SSV-------------------------
-----------------------------------SPA----------------------
--
>    11== M92036   1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
MTEA------WNVAVFA-----ARRSRDD-DDTTRGS-----------------------
VF-TYT---------NTNNT----------------RGPFEGPNY---------------
-HIAPRWVYNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETL
VAS-TISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFG
NI-KFDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSV
ELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQ--------------------
------------------------------------------------------------
------------------------------------------------------------
----------------QKESESTQK---------AEREVSRMVVVMIVAFCICWGPYASF
VSFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIMQLF-------
----GKKV--D-DG-SEASTTSRTEVSSV-SNSSV-------------------------
-----------------------------------APA----------------------
--
>    12== M62903   1 chicken visual pigment <>[BBRC173,1212-1217'90]
MAA-------WEAAFAA-----RRRHEE--EDTTRDS-----------------------
VF-TYT---------NSNNT----------------RGPFEGPNY---------------
-HIAPRWVYNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETV
IAS-TISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFG
NI-KFDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSS
DPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQ--------------------
------------------------------------------------------------
------------------------------------------------------------
----------------QKESESTQK---------AEKEVSRMVVVMIVAYCFCWGPYTFF
ACFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCILQLF-------
----GKKV--D-DG-SEVST-SRTEVSSV-SNSSV-------------------------
-----------------------------------SPA----------------------
--
>    13== S75720   1 chicken P-opsin <>[Science267(5203),1502-1506'95]
MSS---------------------NSSQAPPNGTPG------------------------
--------------------------------------PFDGPQWP--------------
-YQAPQSTYVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTL
CGS-SVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLG
DF-QFQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGS
--NNNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQ--------------------
------------------------------------------------------------
------------------------------------------------------------
----------------QKEADTTQR---------AEREVTRMVIVMVMAFLLCWLPYSTF
ALVVAT-HKGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLLEMLC-----C
----GYQPQRT-GKASPGTPGPHADVTAAGLRNKV-------------------------
-----------------------------------MPAHPV-------------------
--
>    14== M17718   1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
MES-------------------G---------NVSSS-----------------------
LFGNVSTALRP------EARLSA---ETRLL---GWNVPPEELRH--------IPEHWLT
YPEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMV
KT--PIFIYNSFHQG-YA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPME
G--KMTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--D
NFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA--------------------
-------------------------------------------------------LRDQA
------------------------------------------------------------
----------------KKMNVESLRSNVDKNKETAEIRIAKAAITICFLFFCSWTPYGVM
SLIGAF-GDKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWL----
----ALNEKAP-ESSAVASTSTT--QEP-QQTTAA-------------------------
------------------------------------------------------------
--
>    15== X65879   1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
MEY-------------------H---------NVSSV-----------------------
L-GNVSSVLRP------DARLSA---ESRLL---GWNVPPDELRH--------IPEHWLI
YPEPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMI
KT--PIFIYNSFHQG-YA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPME
G--KMTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--D
NFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA--------------------
-------------------------------------------------------LRDQA
------------------------------------------------------------
----------------KKMNVDSLRSNVDKSKEAAEIRIAKAAITICFLFFASWTPYGVM
SLIGAF-GDKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWL----
----AISEKAP-ESRAAISTSTT--QEQ-QQTTAA-------------------------
------------------------------------------------------------
--
>    16== M17730   1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
ME----------------------------------P-----------------------
LCNASEPPLRP------EAR-SSGNGDLQFL---GWNVPPDQIQY--------IPEHWLT
QLEPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCL
KA--PIF--NSFHRG-FAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMN
R--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--D
NFDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA--------------------
-------------------------------------------------------LREQA
------------------------------------------------------------
----------------KKMNVESLRSNVDKSKETAEIRIAKAAITICFLFFVSWTPYGVM
SLIGAF-GDKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWL----
----GVNEKSG-EISSAQST-TT--QEQ-QQTTAA-------------------------
------------------------------------------------------------
--
>    17== X65880   1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
MD----------------------------------A-----------------------
LCNASEPPLRP------EARMSSGSDELQFL---GWNVPPDQIQY--------IPEHWLT
QLEPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCL
KA--PIFIYNSFHRG-FA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMN
R--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--D
NFDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKA--------------------
-------------------------------------------------------LREQA
------------------------------------------------------------
----------------KKMNVESLRSNVDKSKETAEIRIAKAAITICFLFFVSWTPYGVM
SLIGAF-GDKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWL----
----GVNEKSG-EASSAQST-TT--QEQTQQTSAA-------------------------
------------------------------------------------------------
--
>    18== D50584   1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
------------------------------MTNATGP-----------------------
QMAYYGAASMD-FGYPEGVSIVD-------------FVRPEIKPY--------VHQHWYN
YPPVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLT
TNV-PFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFN
G-PKLTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--Q
DFNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAA--------------------
-------------------------------------------------------MRAQA
------------------------------------------------------------
----------------KKMNVSTLRS-NEADAQRAEIRIAKTALVNVSLWFICWTPYALI
SLKGVM-GDTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV--
----HETETKS-NDDSQSNSTVA--QDKA-------------------------------
------------------------------------------------------------
--
>    19== D50583   1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
------------------------------MANVTGP-----------------------
QMAFYGSGAAT-FGYPEGMTVAD-------------FVPDRVKHM--------VLDHWYN
YPPVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLT
TNF-PPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFN
G-PKLTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--R
DMNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAA--------------------
-------------------------------------------------------MRAQA
------------------------------------------------------------
----------------KKMNVTNLRS-NEAETQRAEIRIAKTALVNVSLWFICWTPYAAI
TIQGLL-GNAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV--
----HEKDPND-VEENQSSNTQT--QEKS-------------------------------
------------------------------------------------------------
--
>    20== K02320   1 D.melanogaster opsin <>[Cell40,851-858'85]
------------------------MESFAVAAAQLGP-----------------------
HFAPLS-----------NGSVVD-------------KVTPDMAHL--------ISPYWNQ
FPAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMI
TNT-PMMGINLYFET-WV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMA
G-RPMTIPLALGKM---------------------------YVPEGNLTSCGIDYLE--R
DWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA--------------------
-------------------------------------------------------MREQA
------------------------------------------------------------
----------------KKMNVKSLRS-SEDAEKSAEGKLAKVALVTITLWFMAWTPYLVI
NCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF--
----GKVDDGK-SSDAQSQATAS--EAESKA-----------------------------
------------------------------------------------------------
--
>    21== K02315   1 D.melanogaster ninaE <>[Cell40,839-850'85]
------------------------MESFAVAAAQLGP-----------------------
HFAPLS-----------NGSVVD-------------KVTPDMAHL--------ISPYWNQ
FPAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMI
TNT-PMMGINLYFET-WV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMA
G-RPMTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--R
DWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA--------------------
-------------------------------------------------------MREQA
------------------------------------------------------------
----------------KKMNVKSLRS-SEDAEKSAEGKLAKVALVTITLWFMAWTPYLVI
NCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF--
----GKVDDGK-SSDAQSQATAS--EAESKA-----------------------------
------------------------------------------------------------
--
>    22== X65877   1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
------------------------MDSFAAVATQLGP-----------------------
QFAAPS-----------NGSVVD-------------KVTPDMAHL--------ISPYWDQ
FPAMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMI
TNT-PMMGINLYFET-WV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMA
G-RPMTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--R
DWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA--------------------
-------------------------------------------------------MREQA
------------------------------------------------------------
----------------KKMNVKSLRS-SEDADKSAEGKLAKVALVTISLWFMAWTPYLVI
NCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF--
----GKVDDGK-SSEAQSQATTS--EAESKA-----------------------------
------------------------------------------------------------
--
>    23== M12896   1 D.melanogaster Rh2 <>[Cell44,705-710'86]
MER-------------------SHLPETPFDLAHSGP-----------------------
RFQAQSSG---------NGSVLD-------------NVLPDMAHL--------VNPYWSR
FAPMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMA
SQS-PVMIINFYYET-WV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGIN
G-TPMTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--R
MWNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKA--------------------
-------------------------------------------------------MREQA
------------------------------------------------------------
----------------KKMNVKSLRS-SEDCDKSAEGKLAKVALTTISLWFMAWTPYLVI
CYFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF--
----GNTDEPKPDAPASDTETTS--EADSKA-----------------------------
------------------------------------------------------------
--
>    24== X65878   1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
MER-------------------SLLPEPPLAMALLGP-----------------------
RFEAQTGG---------NRSVLD-------------NVLPDMAPL--------VNPHWSR
FAPMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMA
SQS-PVMIINFYYET-WV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGIN
G-TPMTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--R
QWNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKA--------------------
-------------------------------------------------------MRDQA
------------------------------------------------------------
----------------KKMNVKSLRS-SEDCDKSAENKLAKVALTTISLWFMAWTPYLII
CYFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC--
----GTTDEPKPDAPPSDTETTS--EAESKD-----------------------------
------------------------------------------------------------
--
>    25== U26026   1 Apis mellifera long-wavelength rhodopsin <>[]
------------------------------MIAVSGP-----------------------
SYEAFSYGGQARF---NNQTVVD-------------KVPPDMLHL--------IDANWYQ
YPPLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMF
CMS-PPMVINCYYET-WV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLS
G-KPLSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--R
GLLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKN--------------------
-------------------------------------------------------MREQA
------------------------------------------------------------
----------------KKMNVASLRS-SENQNTSAECKLAKVALMTISLWFMAWTPYLVI
NFSGIF-NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC--
-----AAEPSS-DAVSTTSGTTT--VTDNEKSNA--------------------------
------------------------------------------------------------
--
>    26== L03781   1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
--------------------------------MANQL-----------------------
SYSSLGWPYQP------NASVVD-------------TMPKEMLYM--------IHEHWYA
FPPMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMA
FMM-PTMTSNCFAET-WI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMA
A-APLTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--K
DWSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQ--------------------
-------------------------------------------------------LREQA
------------------------------------------------------------
----------------KKMNVASLRANADQQKQSAECRLAKVAMMTVGLWFMAWTPYLII
SWAGVF-SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC--
----GSGESGS-DVKSEASATTT--MEEKPKIPEA-------------------------
------------------------------------------------------------
--
>    27== X07797   1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
--------------------------------MVEST-----------------------
TLVNQTWWY--------NPTVD-------------------------------IHPHWAK
FDPIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSA
INGFPLKTISAFMKK-WI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMA
ASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--T
DPSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKE--------------------
-------------------------------------------------------MAAMA
------------------------------------------------------------
----------------KRLNAKELR--KAQAGASAEMKLAKISMVIITQFMLSWSPYAII
ALLAQF-GPAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCC
QFDEKECEDAN-DAEEEVVASER--GGESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQG
Y--PPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAY
QA
>    28== X70498   1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
---------------------------------MGRD-----------------------
LRDNETWWY--------NPSIV-------------------------------VHPHWRE
FDQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSL
VNGFPLMTISCFLKK-WI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMA
ASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--R
DSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE--------------------
-------------------------------------------------------MAAMA
------------------------------------------------------------
----------------KRLNAKELR--KAQAGANAEMRLAKISIVIVSQFLLSWSPYAVV
ALLAQF-GPLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCC
QFDDKETEDDK-DAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAY----PPQG
YAPPPQGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAY
QA
>    29== L21195   1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
---------MMDVNSSGRPDLYGHLRSF-LLPEVGRGLPDLSPDGGADPVAGSWAPHLLS
---EVTA--------SPAPTW-------------------DAPPDNASGCGEQIN-----
---YGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAV
AVM-PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLT
YPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF-----
-----GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------------
--------------------------------------P--------GFPR----VEPDS
-------VIAL-----------------NGIVKLQ--------KEVEECAN---------
---------LSRLLKHERKNISIFK---------REQKAATTLGIIVGAFTVCWLPFFLL
STARPFICGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLL------Q
----CQYRNIN-RKLSAAGMHEALKLAE--------------------------------
-----------------------------------RPERPEFVLQNADYCRKKGHDS---
--
>    30== L15228   1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
------------------------------------------------------MPHLLS
GFLEVTA--------SPAPTW-------------------DAPPDNVSGCGEQIN-----
---YGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAV
AVM-PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLT
YPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF-----
-----GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------------
--------------------------------------P--------GFPR----VQPES
-------VISL-----------------NGVVKLQ--------KEVEECAN---------
---------LSRLLKHERKNISIFK---------REQKAATTLGIIVGAFTVCWLPFFLL
STARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLL------Q
----CQYRNIN-RKLSAAGMHEALKLAE--------------------------------
-----------------------------------RPERSEFVLQNSDHCGKKGHDT---
--
>    31=p A47425 serotonin receptor 5HT-7 - rat
------------------------------------------------------MPHLLS
GFLEVTA--------SPAPTW-------------------DAPPDNVSGCGEQIN-----
---YGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAV
AVM-PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLT
YPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF-----
-----GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------------
--------------------------------------P--------GFPR----VQPES
-------VISL-----------------NGVVKLQ--------KEVEECAN---------
---------LSRLLKHERKNISIFK---------REQKAATTLGIIVGAFTVCWLPFFLL
STARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLL------Q
----CQYRNIN-RKLSAAGMHEALKLAE--------------------------------
-----------------------------------RPERSEFVLQNSDHCGKKGHDT---
--
>    32== M83181   1 human serotonin receptor <>[JBC267(11),7553-7562'92]
----------MDVLSPG------------QGNNTTSPPAPFETGG---------------
---NTTG--------ISDVTV---------------------------------------
------SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSV
LVL-PMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPID
YVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH-----
-----GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK--------------------
-------------------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGES
GSR---------NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPS
EAG--PTPCAPASFERKNERNAEAKR---KMALARERKTVKTLGIIMGTFILCWLPFFIV
ALVLPF-CESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII------K
----CKFCRQ--------------------------------------------------
------------------------------------------------------------
--
>    33=p A35181 serotonin receptor class 1A - rat
----------MDVFSFG------------QGNNTTASQEPFGTGG---------------
---NVTS--------ISDVTF---------------------------------------
------SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSV
LVL-PMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPID
YVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH-----
-----GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK--------------------
-------------------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQP
GSG---------DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPS
ESG--SNSYAPACLERKNERNAEAKR---KMALARERKTVKTLGIIMGTFILCWLPFFIV
ALVLPF-CESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII------K
----CKFCRR--------------------------------------------------
------------------------------------------------------------
--
>    34== L06803   1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTG---------------
---LVTS--------DFNDSYGL---TGQFINGSHSSRSRDNASANDTSATNMTDDRYWS
LTVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAV
LVM-PLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-ID
YIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK-----
-----GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVAS
PKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNS
SS----------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDT
PYS-------------RTREKLELK---------RERKAARTLAIITGAFLICWLPFFII
ALIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL------F
----GKYRRGH-R-----------------------------------------------
------------------------------------------------------------
--
>    35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTG---------------
---LVTS--------DFNDSYGL---TGQFINGSHSSRSRDNASANDTSATNMTDDRYWS
LTVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAV
LVM-PLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-ID
YIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK-----
-----GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVAS
PKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNS
SS----------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDT
PYS-------------RTREKLELK---------RERKAARTLAIITGAFLICWLPFFII
ALIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL------F
----GKYRRGH-R-----------------------------------------------
------------------------------------------------------------
--
>    36== X95604   1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
-MEGAEGQEELDWEAL-------YLRLP--LQNCSWNSTGWEPNW---------------
---NVTV--------VPNTTW------------WQASAPFDTPAALVRAAAK--------
------------AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVAC
LVM-PLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-ID
YIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV-----
-----GYQIFATASSFYVPVLIILILYWRIYQTARKRIR---------------------
------------------------RRRGATARGGVGPPP---------VPAGGALVAGGG
SGGIAAAVVAVIGRPLPTISETTTTGFTNVSS----NNTS---PEKQSCANGLEADPPTT
GYGAVAAAYYPSLVRRKPKEAADSK---------RERKAAKTLAIITGAFVACWLPFFVL
AILVPT-CDCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLL------C
----GRRVRRR-RA----------------------------------------------
------------------------------------PQ----------------------
--
