Source: hyphy
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 9),
               dh-python,
               cmake (>= 3.0),
               python-dev,
               python3-dev,
               mpi-default-dev,
               libcurl4-gnutls-dev | libcurl4-dev,
               python,
               libgtk2.0-dev,
               libssl-dev,
               libsqlite3-dev
Standards-Version: 3.9.6
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/hyphy.git
Vcs-Git: git://anonscm.debian.org/debian-med/hyphy.git
Homepage: http://hyphy.org/
X-Python-Version: >= 2.7
X-Python3-Version: >= 3.4

Package: hyphygui
Architecture: any
Depends: ${shlibs:Depends},
         ${misc:Depends},
         hyphy-common
Description: Hypothesis testing using Phylogenies (GTK+ gui)
 HyPhy is an open-source software package for the analysis of genetic
 sequences using techniques in phylogenetics, molecular evolution, and
 machine learning. It features a complete graphical user interface (GUI)
 and a rich scripting language for limitless customization of analyses.
 Additionally, HyPhy features support for parallel computing environments
 (via message passing interface) and it can be compiled as a shared
 library and called from other programming environments such as Python or
 R.  Continued development of HyPhy is currently supported in part by an
 NIGMS R01 award 1R01GM093939.
 .
 This package contains the GTK+ gui.

Package: hyphy-pt
Architecture: any
Depends: ${shlibs:Depends},
         ${misc:Depends},
         hyphy-common
Description: Hypothesis testing using Phylogenies (pthreads version)
 HyPhy is an open-source software package for the analysis of genetic
 sequences using techniques in phylogenetics, molecular evolution, and
 machine learning. It features a complete graphical user interface (GUI)
 and a rich scripting language for limitless customization of analyses.
 Additionally, HyPhy features support for parallel computing environments
 (via message passing interface) and it can be compiled as a shared
 library and called from other programming environments such as Python or
 R.  Continued development of HyPhy is currently supported in part by an
 NIGMS R01 award 1R01GM093939.
 .
 This package provides an executable using pthreads to do multiprocessing.

Package: hyphy-mpi
Architecture: any
Depends: ${shlibs:Depends},
         ${misc:Depends},
         hyphy-common
Description: Hypothesis testing using Phylogenies (MPI version)
 HyPhy is an open-source software package for the analysis of genetic
 sequences using techniques in phylogenetics, molecular evolution, and
 machine learning. It features a complete graphical user interface (GUI)
 and a rich scripting language for limitless customization of analyses.
 Additionally, HyPhy features support for parallel computing environments
 (via message passing interface) and it can be compiled as a shared
 library and called from other programming environments such as Python or
 R.  Continued development of HyPhy is currently supported in part by an
 NIGMS R01 award 1R01GM093939.
 .
 This package provides an executable using MPI to do multiprocessing.

Package: hyphy-common
Architecture: all
Depends: ${misc:Depends}
Suggests: hyphygui | hyphy-mpi | hyphy-pt
Description: Hypothesis testing using Phylogenies (common files)
 HyPhy is an open-source software package for the analysis of genetic
 sequences using techniques in phylogenetics, molecular evolution, and
 machine learning. It features a complete graphical user interface (GUI)
 and a rich scripting language for limitless customization of analyses.
 Additionally, HyPhy features support for parallel computing environments
 (via message passing interface) and it can be compiled as a shared
 library and called from other programming environments such as Python or
 R.  Continued development of HyPhy is currently supported in part by an
 NIGMS R01 award 1R01GM093939.
 .
 This package provides files that are common to all binary versions.

Package: python-hyphy
Architecture: any
Section: python
Depends: ${shlibs:Depends},
         ${misc:Depends},
         ${python:Depends},
         hyphy-common
Description: Hypothesis testing using Phylogenies (Python 2 module)
 HyPhy is an open-source software package for the analysis of genetic
 sequences using techniques in phylogenetics, molecular evolution, and
 machine learning. It features a complete graphical user interface (GUI)
 and a rich scripting language for limitless customization of analyses.
 Additionally, HyPhy features support for parallel computing environments
 (via message passing interface) and it can be compiled as a shared
 library and called from other programming environments such as Python or
 R.  Continued development of HyPhy is currently supported in part by an
 NIGMS R01 award 1R01GM093939.
 .
 This package provides files the Python 2 module.

Package: python3-hyphy
Architecture: any
Section: python
Depends: ${shlibs:Depends},
         ${misc:Depends},
         ${python3:Depends},
         hyphy-common
Description: Hypothesis testing using Phylogenies (Python 3 module)
 HyPhy is an open-source software package for the analysis of genetic
 sequences using techniques in phylogenetics, molecular evolution, and
 machine learning. It features a complete graphical user interface (GUI)
 and a rich scripting language for limitless customization of analyses.
 Additionally, HyPhy features support for parallel computing environments
 (via message passing interface) and it can be compiled as a shared
 library and called from other programming environments such as Python or
 R.  Continued development of HyPhy is currently supported in part by an
 NIGMS R01 award 1R01GM093939.
 .
 This package provides files the Python 3 module.

#Package: libhyphy
#Architecture: any
#Depends: ${shlibs:Depends},
#         ${misc:Depends}
#Description: Hypothesis testing using Phylogenies (library)
# HyPhy is an open-source software package for the analysis of genetic
# sequences using techniques in phylogenetics, molecular evolution, and
# machine learning. It features a complete graphical user interface (GUI)
# and a rich scripting language for limitless customization of analyses.
# Additionally, HyPhy features support for parallel computing environments
# (via message passing interface) and it can be compiled as a shared
# library and called from other programming environments such as Python or
# R.  Continued development of HyPhy is currently supported in part by an
# NIGMS R01 award 1R01GM093939.
# .
# This package provides files that a dynamic library.
# .
# .
# The usage is unclear currently and upstream was asked for
# clarification
#
