#!/bin/bash
set -e

pkg="htslib"

if [ "$AUTOPKGTEST_TMP" = "" ] ; then
  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
fi

cp -a /usr/share/${pkg}-test/* $AUTOPKGTEST_TMP

cd $AUTOPKGTEST_TMP

sed -i 's#\$(HTSPREFIX)#/usr/include/#g' htslib_vars.mk
sed -i 's#\$(HTSLIB)#/usr/include/#g' htslib.mk

# Replace symlinks with actual headers
rm -rf cram/*.h
cp -a /usr/include/htslib/cram/*.h cram/

make check -j4

echo "PASS"
