Reference:
- Author: S. R. Eddy
  Title: Profile hidden Markov models
  Journal: Bioinformatics
  Volume: 14
  Number: 9
  Pages: 755-763
  Year: 1998
  DOI: 10.1093/bioinformatics/14.9.755
  PMID: 9918945
  URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/14/9/755
  eprint: >
    http://bioinformatics.oxfordjournals.org/content/14/9/755.full.pdf+html
- Author: S. R. Eddy
  Title: Multiple Alignment Using Hidden Markov Models
  Journal: Proc. Third Int. Conf. Intelligent Systems for Molecular Biology
  Volume: 3
  Pages: 114-120
  Year: 1995
  PMID: 7584426
  URL: "http://www.mendeley.com/research/multiple-alignment-using-hidden-markov-models-1/"
  Eprint: ftp://selab.janelia.org/pub/publications/Eddy95b/Eddy95b-preprint.pdf
Registry:
- Name: SciCrunch
  Entry: SCR_005305
- Name: bio.tools
  Entry: HMMER3
- Name: OMICtools
  Entry: OMICS_00996
- Name: conda:bioconda
  Entry: hmmer
Bug-Submit: sean@eddylab.org
