CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE.txt
MANIFEST.in
Makefile
README.rst
cwltool.py
gittaggers.py
mypy-requirements.txt
mypy.ini
requirements.txt
setup.cfg
setup.py
test-requirements.txt
tox.ini
cwltool/__init__.py
cwltool/__main__.py
cwltool/argparser.py
cwltool/builder.py
cwltool/checker.py
cwltool/command_line_tool.py
cwltool/context.py
cwltool/cwlNodeEngine.js
cwltool/cwlNodeEngineJSConsole.js
cwltool/cwlNodeEngineWithContext.js
cwltool/cwlrdf.py
cwltool/cwlviewer.py
cwltool/docker.py
cwltool/docker_id.py
cwltool/env_to_stdout.py
cwltool/errors.py
cwltool/executors.py
cwltool/expression.py
cwltool/extensions-v1.1.yml
cwltool/extensions.yml
cwltool/factory.py
cwltool/flatten.py
cwltool/hello.simg
cwltool/job.py
cwltool/load_tool.py
cwltool/loghandler.py
cwltool/main.py
cwltool/mpi.py
cwltool/mutation.py
cwltool/pack.py
cwltool/pathmapper.py
cwltool/process.py
cwltool/procgenerator.py
cwltool/provenance.py
cwltool/provenance_constants.py
cwltool/provenance_profile.py
cwltool/py.typed
cwltool/resolver.py
cwltool/run_job.py
cwltool/sandboxjs.py
cwltool/secrets.py
cwltool/singularity.py
cwltool/singularity_utils.py
cwltool/software_requirements.py
cwltool/stdfsaccess.py
cwltool/subgraph.py
cwltool/task_queue.py
cwltool/udocker.py
cwltool/update.py
cwltool/utils.py
cwltool/validate_js.py
cwltool/workflow.py
cwltool/workflow_job.py
cwltool.egg-info/PKG-INFO
cwltool.egg-info/SOURCES.txt
cwltool.egg-info/dependency_links.txt
cwltool.egg-info/entry_points.txt
cwltool.egg-info/requires.txt
cwltool.egg-info/top_level.txt
cwltool.egg-info/zip-safe
cwltool/jshint/jshint.js
cwltool/jshint/jshint_wrapper.js
cwltool/rdfqueries/get_inner_edges.sparql
cwltool/rdfqueries/get_input_edges.sparql
cwltool/rdfqueries/get_output_edges.sparql
cwltool/rdfqueries/get_root.sparql
cwltool/schemas/v1.0/CommandLineTool-standalone.yml
cwltool/schemas/v1.0/CommandLineTool.yml
cwltool/schemas/v1.0/CommonWorkflowLanguage.yml
cwltool/schemas/v1.0/Process.yml
cwltool/schemas/v1.0/README.md
cwltool/schemas/v1.0/UserGuide.yml
cwltool/schemas/v1.0/Workflow.yml
cwltool/schemas/v1.0/concepts.md
cwltool/schemas/v1.0/contrib.md
cwltool/schemas/v1.0/intro.md
cwltool/schemas/v1.0/invocation.md
cwltool/schemas/v1.0/userguide-intro.md
cwltool/schemas/v1.0/salad/schema_salad/metaschema/field_name.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/field_name_proc.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/field_name_schema.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/field_name_src.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/ident_res.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/ident_res_proc.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/ident_res_schema.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/ident_res_src.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/import_include.md
cwltool/schemas/v1.0/salad/schema_salad/metaschema/link_res.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/link_res_proc.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/link_res_schema.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/link_res_src.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/map_res.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/map_res_proc.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/map_res_schema.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/map_res_src.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/metaschema.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/metaschema_base.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/salad.md
cwltool/schemas/v1.0/salad/schema_salad/metaschema/typedsl_res.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/typedsl_res_proc.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/typedsl_res_schema.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/typedsl_res_src.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/vocab_res.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/vocab_res_proc.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/vocab_res_schema.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/vocab_res_src.yml
cwltool/schemas/v1.1/CODE_OF_CONDUCT.md
cwltool/schemas/v1.1/CONFORMANCE_TESTS.md
cwltool/schemas/v1.1/CommandLineTool-standalone.yml
cwltool/schemas/v1.1/CommandLineTool.yml
cwltool/schemas/v1.1/CommonWorkflowLanguage.yml
cwltool/schemas/v1.1/Process.yml
cwltool/schemas/v1.1/README.md
cwltool/schemas/v1.1/Workflow.yml
cwltool/schemas/v1.1/concepts.md
cwltool/schemas/v1.1/contrib.md
cwltool/schemas/v1.1/index.md
cwltool/schemas/v1.1/intro.md
cwltool/schemas/v1.1/invocation.md
cwltool/schemas/v1.1.0-dev1/CommandLineTool-standalone.yml
cwltool/schemas/v1.1.0-dev1/CommandLineTool.yml
cwltool/schemas/v1.1.0-dev1/CommonWorkflowLanguage.yml
cwltool/schemas/v1.1.0-dev1/Process.yml
cwltool/schemas/v1.1.0-dev1/README.md
cwltool/schemas/v1.1.0-dev1/Workflow.yml
cwltool/schemas/v1.1.0-dev1/concepts.md
cwltool/schemas/v1.1.0-dev1/contrib.md
cwltool/schemas/v1.1.0-dev1/intro.md
cwltool/schemas/v1.1.0-dev1/invocation.md
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/field_name.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/field_name_proc.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/field_name_schema.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/field_name_src.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/ident_res.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/ident_res_proc.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/ident_res_schema.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/ident_res_src.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/import_include.md
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/link_res.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/link_res_proc.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/link_res_schema.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/link_res_src.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/map_res.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/map_res_proc.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/map_res_schema.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/map_res_src.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/metaschema.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/metaschema_base.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/salad.md
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/typedsl_res.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/typedsl_res_proc.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/typedsl_res_schema.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/typedsl_res_src.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/vocab_res.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/vocab_res_proc.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/vocab_res_schema.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/vocab_res_src.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/field_name.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/field_name_proc.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/field_name_schema.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/field_name_src.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/ident_res.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/ident_res_proc.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/ident_res_schema.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/ident_res_src.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/import_include.md
cwltool/schemas/v1.1/salad/schema_salad/metaschema/link_res.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/link_res_proc.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/link_res_schema.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/link_res_src.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/map_res.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/map_res_proc.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/map_res_schema.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/map_res_src.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/metaschema.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/metaschema_base.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/salad.md
cwltool/schemas/v1.1/salad/schema_salad/metaschema/typedsl_res.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/typedsl_res_proc.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/typedsl_res_schema.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/typedsl_res_src.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/vocab_res.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/vocab_res_proc.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/vocab_res_schema.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/vocab_res_src.yml
cwltool/schemas/v1.2/CODE_OF_CONDUCT.md
cwltool/schemas/v1.2/CONFORMANCE_TESTS.md
cwltool/schemas/v1.2/CommandLineTool-standalone.yml
cwltool/schemas/v1.2/CommandLineTool.yml
cwltool/schemas/v1.2/CommonWorkflowLanguage.yml
cwltool/schemas/v1.2/Operation.yml
cwltool/schemas/v1.2/Process.yml
cwltool/schemas/v1.2/README.md
cwltool/schemas/v1.2/Workflow.yml
cwltool/schemas/v1.2/concepts.md
cwltool/schemas/v1.2/contrib.md
cwltool/schemas/v1.2/index.md
cwltool/schemas/v1.2/intro.md
cwltool/schemas/v1.2/invocation.md
cwltool/schemas/v1.2.0-dev2/CommandLineTool-standalone.yml
cwltool/schemas/v1.2.0-dev2/CommandLineTool.yml
cwltool/schemas/v1.2.0-dev2/CommonWorkflowLanguage.yml
cwltool/schemas/v1.2.0-dev2/Operation.yml
cwltool/schemas/v1.2.0-dev2/Process.yml
cwltool/schemas/v1.2.0-dev2/README.md
cwltool/schemas/v1.2.0-dev2/Workflow.yml
cwltool/schemas/v1.2.0-dev2/concepts.md
cwltool/schemas/v1.2.0-dev2/contrib.md
cwltool/schemas/v1.2.0-dev2/intro.md
cwltool/schemas/v1.2.0-dev2/invocation.md
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/field_name.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/field_name_proc.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/field_name_schema.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/field_name_src.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/ident_res.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/ident_res_proc.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/ident_res_schema.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/ident_res_src.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/import_include.md
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/link_res.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/link_res_proc.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/link_res_schema.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/link_res_src.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/map_res.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/map_res_proc.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/map_res_schema.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/map_res_src.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/metaschema.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/metaschema_base.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/salad.md
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/sfdsl_res.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/sfdsl_res_proc.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/sfdsl_res_schema.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/sfdsl_res_src.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/typedsl_res.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/typedsl_res_proc.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/typedsl_res_schema.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/typedsl_res_src.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/vocab_res.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/vocab_res_proc.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/vocab_res_schema.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/vocab_res_src.yml
cwltool/schemas/v1.2.0-dev3/CommandLineTool-standalone.yml
cwltool/schemas/v1.2.0-dev3/CommandLineTool.yml
cwltool/schemas/v1.2.0-dev3/CommonWorkflowLanguage.yml
cwltool/schemas/v1.2.0-dev3/Operation.yml
cwltool/schemas/v1.2.0-dev3/Process.yml
cwltool/schemas/v1.2.0-dev3/README.md
cwltool/schemas/v1.2.0-dev3/Workflow.yml
cwltool/schemas/v1.2.0-dev3/concepts.md
cwltool/schemas/v1.2.0-dev3/contrib.md
cwltool/schemas/v1.2.0-dev3/index.md
cwltool/schemas/v1.2.0-dev3/intro.md
cwltool/schemas/v1.2.0-dev3/invocation.md
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/field_name.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/field_name_proc.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/field_name_schema.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/field_name_src.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/ident_res.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/ident_res_proc.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/ident_res_schema.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/ident_res_src.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/import_include.md
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/link_res.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/link_res_proc.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/link_res_schema.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/link_res_src.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/map_res.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/map_res_proc.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/map_res_schema.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/map_res_src.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/metaschema.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/metaschema_base.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/salad.md
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/sfdsl_res.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/sfdsl_res_proc.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/sfdsl_res_schema.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/sfdsl_res_src.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/typedsl_res.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/typedsl_res_proc.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/typedsl_res_schema.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/typedsl_res_src.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/vocab_res.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/vocab_res_proc.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/vocab_res_schema.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/vocab_res_src.yml
cwltool/schemas/v1.2.0-dev4/CODE_OF_CONDUCT.md
cwltool/schemas/v1.2.0-dev4/CONFORMANCE_TESTS.md
cwltool/schemas/v1.2.0-dev4/CommandLineTool-standalone.yml
cwltool/schemas/v1.2.0-dev4/CommandLineTool.yml
cwltool/schemas/v1.2.0-dev4/CommonWorkflowLanguage.yml
cwltool/schemas/v1.2.0-dev4/Operation.yml
cwltool/schemas/v1.2.0-dev4/Process.yml
cwltool/schemas/v1.2.0-dev4/README.md
cwltool/schemas/v1.2.0-dev4/Workflow.yml
cwltool/schemas/v1.2.0-dev4/concepts.md
cwltool/schemas/v1.2.0-dev4/contrib.md
cwltool/schemas/v1.2.0-dev4/index.md
cwltool/schemas/v1.2.0-dev4/intro.md
cwltool/schemas/v1.2.0-dev4/invocation.md
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/field_name.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/field_name_proc.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/field_name_schema.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/field_name_src.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/ident_res.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/ident_res_proc.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/ident_res_schema.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/ident_res_src.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/import_include.md
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/link_res.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/link_res_proc.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/link_res_schema.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/link_res_src.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/map_res.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/map_res_proc.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/map_res_schema.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/map_res_src.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/metaschema.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/metaschema_base.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/salad.md
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/sfdsl_res.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/sfdsl_res_proc.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/sfdsl_res_schema.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/sfdsl_res_src.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/typedsl_res.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/typedsl_res_proc.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/typedsl_res_schema.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/typedsl_res_src.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/vocab_res.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/vocab_res_proc.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/vocab_res_schema.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/vocab_res_src.yml
cwltool/schemas/v1.2.0-dev5/CODE_OF_CONDUCT.md
cwltool/schemas/v1.2.0-dev5/CONFORMANCE_TESTS.md
cwltool/schemas/v1.2.0-dev5/CommandLineTool-standalone.yml
cwltool/schemas/v1.2.0-dev5/CommandLineTool.yml
cwltool/schemas/v1.2.0-dev5/CommonWorkflowLanguage.yml
cwltool/schemas/v1.2.0-dev5/Operation.yml
cwltool/schemas/v1.2.0-dev5/Process.yml
cwltool/schemas/v1.2.0-dev5/README.md
cwltool/schemas/v1.2.0-dev5/Workflow.yml
cwltool/schemas/v1.2.0-dev5/concepts.md
cwltool/schemas/v1.2.0-dev5/contrib.md
cwltool/schemas/v1.2.0-dev5/index.md
cwltool/schemas/v1.2.0-dev5/intro.md
cwltool/schemas/v1.2.0-dev5/invocation.md
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/field_name.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/field_name_proc.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/field_name_schema.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/field_name_src.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/ident_res.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/ident_res_proc.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/ident_res_schema.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/ident_res_src.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/import_include.md
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/link_res.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/link_res_proc.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/link_res_schema.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/link_res_src.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/map_res.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/map_res_proc.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/map_res_schema.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/map_res_src.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/metaschema.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/metaschema_base.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/salad.md
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/sfdsl_res.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/sfdsl_res_proc.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/sfdsl_res_schema.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/sfdsl_res_src.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/typedsl_res.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/typedsl_res_proc.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/typedsl_res_schema.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/typedsl_res_src.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/vocab_res.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/vocab_res_proc.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/vocab_res_schema.yml
cwltool/schemas/v1.2.0-dev5/salad/schema_salad/metaschema/vocab_res_src.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/field_name.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/field_name_proc.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/field_name_schema.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/field_name_src.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/ident_res.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/ident_res_proc.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/ident_res_schema.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/ident_res_src.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/import_include.md
cwltool/schemas/v1.2/salad/schema_salad/metaschema/link_res.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/link_res_proc.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/link_res_schema.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/link_res_src.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/map_res.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/map_res_proc.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/map_res_schema.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/map_res_src.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/metaschema.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/metaschema_base.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/salad.md
cwltool/schemas/v1.2/salad/schema_salad/metaschema/sfdsl_res.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/sfdsl_res_proc.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/sfdsl_res_schema.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/sfdsl_res_src.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/typedsl_res.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/typedsl_res_proc.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/typedsl_res_schema.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/typedsl_res_src.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/vocab_res.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/vocab_res_proc.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/vocab_res_schema.yml
cwltool/schemas/v1.2/salad/schema_salad/metaschema/vocab_res_src.yml
tests/2.fasta
tests/2.fastq
tests/__init__.py
tests/arg-empty-prefix-separate-false.cwl
tests/bundle-context.jsonld
tests/debian_image_id.cwl
tests/echo-badposition-expr.cwl
tests/echo-job.yaml
tests/echo-position-expr-job.yml
tests/echo-position-expr.cwl
tests/echo.cwl
tests/echo_broken_outputs.cwl
tests/env.cwl
tests/env2.cwl
tests/env3.cwl
tests/env4.cwl
tests/env_with_software_req.yml
tests/iwdr_bad_expr.cwl
tests/iwdr_dir_literal_real_file.cwl
tests/listing-job.yml
tests/listing2-job.yml
tests/non_portable.cwl
tests/non_portable2.cwl
tests/portable.cwl
tests/random_lines.cwl
tests/random_lines_job.json
tests/random_lines_mapping.cwl
tests/scatter_numbers.cwl
tests/secondary-files-bad.cwl
tests/secondary-files-job.yml
tests/secondary-files-string-v1.cwl
tests/secondary-files.cwl
tests/seqtk_seq.cwl
tests/seqtk_seq_job.json
tests/seqtk_seq_with_docker.cwl
tests/seqtk_seq_wrong_name.cwl
tests/sing_pullfolder_test.cwl
tests/test_anon_types.py
tests/test_bad_outputs_wf.cwl
tests/test_check.py
tests/test_content_type.py
tests/test_context.py
tests/test_cwl_version.py
tests/test_default_path.py
tests/test_dependencies.py
tests/test_deps_env_modules_resolvers_conf.yml
tests/test_deps_env_resolvers_conf.yml
tests/test_deps_env_resolvers_conf_rewrite.yml
tests/test_deps_mapping.yml
tests/test_docker.py
tests/test_docker_info.py
tests/test_docker_paths_with_colons.py
tests/test_empty_input.py
tests/test_environment.py
tests/test_examples.py
tests/test_ext.py
tests/test_fetch.py
tests/test_http_input.py
tests/test_iwdr.py
tests/test_js_sandbox.py
tests/test_load_tool.py
tests/test_mpi.py
tests/test_override.py
tests/test_pack.py
tests/test_parallel.py
tests/test_path_checks.py
tests/test_pathmapper.py
tests/test_procgenerator.py
tests/test_provenance.py
tests/test_rdfprint.py
tests/test_recursive_validation.py
tests/test_relocate.py
tests/test_schemadef.py
tests/test_secrets.py
tests/test_singularity.py
tests/test_streaming.py
tests/test_subgraph.py
tests/test_target.py
tests/test_tmpdir.py
tests/test_toolargparse.py
tests/test_trs.py
tests/test_udocker.py
tests/test_validate_js.py
tests/test_windows_warning.py
tests/utf_doc_example.cwl
tests/util.py
tests/wc-tool-bad-hints.cwl
tests/wc-tool-bad-reqs.cwl
tests/with_doc.cwl
tests/without_doc.cwl
tests/checker_wf/broken-wf.cwl
tests/checker_wf/broken-wf2.cwl
tests/checker_wf/broken-wf3.cwl
tests/checker_wf/cat-a.cwl
tests/checker_wf/cat.cwl
tests/checker_wf/circ-dep-wf.cwl
tests/checker_wf/circ-dep-wf2.cwl
tests/checker_wf/echo.cwl
tests/checker_wf/functional-wf.cwl
tests/checker_wf/ls.cwl
tests/checker_wf/test.txt
tests/checker_wf/wc.cwl
tests/override/echo-job-ov.yml
tests/override/echo-job-ov2.yml
tests/override/echo-job.yml
tests/override/echo-wf.cwl
tests/override/echo.cwl
tests/override/env-tool.cwl
tests/override/env-tool_cwl-requirement_override.yaml
tests/override/env-tool_cwl-requirement_override_default.yaml
tests/override/env-tool_cwl-requirement_override_default_wrongver.yaml
tests/override/env-tool_v1.1.0-dev1.cwl
tests/override/env-tool_v1.1.cwl
tests/override/ov.yml
tests/override/ov2.yml
tests/override/ov3.yml
tests/reloc/test.cwl
tests/reloc/dir1/foo
tests/reloc/dir2/foo
tests/subgraph/1432.cwl
tests/subgraph/count-lines1-wf.cwl
tests/subgraph/env-job.json
tests/subgraph/env-tool2.cwl
tests/subgraph/env-tool2_no_env.cwl
tests/subgraph/env-tool2_req.cwl
tests/subgraph/env-wf2.cwl
tests/subgraph/env-wf2_hint_collision.cwl
tests/subgraph/env-wf2_hint_req_collision.cwl
tests/subgraph/env-wf2_only_hint.cwl
tests/subgraph/env-wf2_req_collision.cwl
tests/subgraph/env-wf2_subwf-packed.cwl
tests/subgraph/env-wf2_subwf.cwl
tests/subgraph/extract_count_output.json
tests/subgraph/extract_file1.json
tests/subgraph/extract_file2.json
tests/subgraph/extract_file3.json
tests/subgraph/extract_output3.json
tests/subgraph/extract_output4.json
tests/subgraph/extract_output5.json
tests/subgraph/extract_step1.json
tests/subgraph/extract_step2.json
tests/subgraph/extract_step2_1432.json
tests/subgraph/extract_step3.json
tests/subgraph/extract_step4.json
tests/subgraph/extract_step5.json
tests/subgraph/parseInt-tool.cwl
tests/subgraph/single_step1.json
tests/subgraph/single_step2.json
tests/subgraph/single_step3.json
tests/subgraph/single_step4.json
tests/subgraph/single_step5.json
tests/subgraph/wc-tool.cwl
tests/tmp1/tmp2/tmp3/.gitkeep
tests/tmp4/alpha/baker
tests/tmp4/alpha/charlie
tests/tmp4/alpha/delta
tests/tmp4/alpha/echo
tests/tmp4/alpha/foxtrot
tests/trs/Dockstore.cwl
tests/trs/md5sum-tool.cwl
tests/trs/md5sum-workflow.cwl
tests/wf/1496.cwl
tests/wf/1st-workflow.cwl
tests/wf/811.cwl
tests/wf/811_inputs.yml
tests/wf/816_tool.cwl
tests/wf/816_wf.cwl
tests/wf/910.cwl
tests/wf/arguments.cwl
tests/wf/bad-stderr-expr.cwl
tests/wf/bad-stdin-expr.cwl
tests/wf/bad-stdout-expr.cwl
tests/wf/bad_formattest.cwl
tests/wf/bad_networkaccess.cwl
tests/wf/bad_timelimit.cwl
tests/wf/badout1.cwl
tests/wf/badout2.cwl
tests/wf/badout3.cwl
tests/wf/cache_test_workflow.cwl
tests/wf/cat-tool.cwl
tests/wf/cat.cwl
tests/wf/conflict.cwl
tests/wf/count-lines1-wf.cwl
tests/wf/default-dir5.cwl
tests/wf/default-wf5.cwl
tests/wf/default_path.cwl
tests/wf/directory.cwl
tests/wf/echo.cwl
tests/wf/empty.ttl
tests/wf/empty2.ttl
tests/wf/expect_iwd-passthrough1_packed.cwl
tests/wf/expect_packed.cwl
tests/wf/expect_revsort_datetime_packed.cwl
tests/wf/expect_trick_packed.cwl
tests/wf/formattest-job.json
tests/wf/formattest.cwl
tests/wf/hello-workflow.cwl
tests/wf/hello.txt
tests/wf/hello_single_tool.cwl
tests/wf/iwd-passthrough1.cwl
tests/wf/iwdr-empty.cwl
tests/wf/iwdr-entry.cwl
tests/wf/iwdr_permutations.cwl
tests/wf/iwdr_permutations_inplace.yml
tests/wf/iwdr_permutations_nocontainer.cwl
tests/wf/js_output.cwl
tests/wf/js_output_workflow.cwl
tests/wf/listing_deep.cwl
tests/wf/listing_none.cwl
tests/wf/listing_shallow.cwl
tests/wf/listing_v1_0.cwl
tests/wf/literalfile-job.yml
tests/wf/literalfile.cwl
tests/wf/malformed_outputs.cwl
tests/wf/missing-tool.cwl
tests/wf/missing_cwlVersion.cwl
tests/wf/mpi_env.cwl
tests/wf/mpi_expr.cwl
tests/wf/mpi_expr.yml
tests/wf/mpi_line_count.cwl
tests/wf/mpi_simple.cwl
tests/wf/mpi_simple_wf.cwl
tests/wf/mut.cwl
tests/wf/mut2.cwl
tests/wf/mut3.cwl
tests/wf/nested.cwl
tests/wf/networkaccess-fail.cwl
tests/wf/networkaccess.cwl
tests/wf/no-parameters-echo.cwl
tests/wf/optional-numerical-output-0.cwl
tests/wf/override-no-secrets.yml
tests/wf/packed-with-loadlisting.cwl
tests/wf/paramref_arguments_self.cwl
tests/wf/parseInt-tool.cwl
tests/wf/revsort-job.json
tests/wf/revsort.cwl
tests/wf/revsort_datetime.cwl
tests/wf/revtool.cwl
tests/wf/scatter-job2.json
tests/wf/scatter-wf4.cwl
tests/wf/scatter-wf4.json
tests/wf/scatter2.cwl
tests/wf/scatter2_subwf.cwl
tests/wf/scatterfail.cwl
tests/wf/schemadef-bug-1473.cwl
tests/wf/schemadef-tool.cwl
tests/wf/schemadef-type.yml
tests/wf/sec-tool.cwl
tests/wf/sec-wf-out.cwl
tests/wf/sec-wf.cwl
tests/wf/secret_job.cwl
tests/wf/secret_wf.cwl
tests/wf/separate_without_prefix.cwl
tests/wf/sorttool.cwl
tests/wf/tar-param.cwl
tests/wf/timelimit-fail.cwl
tests/wf/timelimit.cwl
tests/wf/touch_tool.cwl
tests/wf/trick_defaults.cwl
tests/wf/trick_defaults2.cwl
tests/wf/trick_revsort.cwl
tests/wf/updatedir.cwl
tests/wf/updatedir_inplace.cwl
tests/wf/updateval.cwl
tests/wf/updateval.py
tests/wf/updateval_inplace.cwl
tests/wf/vf-concat.cwl
tests/wf/wc-job.json
tests/wf/wc-tool.cwl
tests/wf/wffail.cwl
tests/wf/whale.txt
tests/wf/workreuse-fail.cwl
tests/wf/workreuse.cwl
tests/wf/wrong_cwlVersion.cwl
tests/wf/generator/pytoolgen.cwl
tests/wf/generator/zing.cwl
tests/wf/operation/abstract-cosifer.cwl
tests/wf/operation/expect_operation-single_packed.cwl
tests/wf/operation/operation-single.cwl
typeshed/bagit.pyi
typeshed/mistune.pyi
typeshed/psutil.pyi
typeshed/pydot.pyi
typeshed/subprocess.pyi
typeshed/arcp/__init__.pyi
typeshed/arcp/generate.pyi
typeshed/arcp/parse.pyi
typeshed/argcomplete/__init__.pyi
typeshed/black/__init__.pyi
typeshed/cachecontrol/__init__.pyi
typeshed/cachecontrol/adapter.pyi
typeshed/cachecontrol/cache.pyi
typeshed/cachecontrol/compat.pyi
typeshed/cachecontrol/controller.pyi
typeshed/cachecontrol/filewrapper.pyi
typeshed/cachecontrol/serialize.pyi
typeshed/cachecontrol/wrapper.pyi
typeshed/cachecontrol/caches/__init__.pyi
typeshed/cachecontrol/caches/file_cache.pyi
typeshed/coloredlogs/__init__.pyi
typeshed/galaxy/__init__.pyi
typeshed/galaxy/exceptions/__init__.pyi
typeshed/galaxy/exceptions/error_codes.pyi
typeshed/galaxy/jobs/__init__.pyi
typeshed/galaxy/jobs/metrics/__init__.pyi
typeshed/galaxy/jobs/metrics/formatting.pyi
typeshed/galaxy/jobs/metrics/collectl/__init__.pyi
typeshed/galaxy/jobs/metrics/collectl/cli.pyi
typeshed/galaxy/jobs/metrics/collectl/processes.pyi
typeshed/galaxy/jobs/metrics/collectl/stats.pyi
typeshed/galaxy/jobs/metrics/collectl/subsystems.pyi
typeshed/galaxy/jobs/metrics/instrumenters/__init__.pyi
typeshed/galaxy/jobs/metrics/instrumenters/collectl.pyi
typeshed/galaxy/jobs/metrics/instrumenters/core.pyi
typeshed/galaxy/jobs/metrics/instrumenters/cpuinfo.pyi
typeshed/galaxy/jobs/metrics/instrumenters/env.pyi
typeshed/galaxy/jobs/metrics/instrumenters/meminfo.pyi
typeshed/galaxy/jobs/metrics/instrumenters/uname.pyi
typeshed/galaxy/objectstore/__init__.pyi
typeshed/galaxy/objectstore/azure_blob.pyi
typeshed/galaxy/objectstore/pulsar.pyi
typeshed/galaxy/objectstore/rods.pyi
typeshed/galaxy/objectstore/s3.pyi
typeshed/galaxy/objectstore/s3_multipart_upload.pyi
typeshed/galaxy/tool_util/__init__.pyi
typeshed/galaxy/tool_util/fetcher.pyi
typeshed/galaxy/tool_util/lint.pyi
typeshed/galaxy/tool_util/lint_util.pyi
typeshed/galaxy/tool_util/loader.pyi
typeshed/galaxy/tool_util/loader_directory.pyi
typeshed/galaxy/tool_util/cwl/__init__.pyi
typeshed/galaxy/tool_util/cwl/cwltool_deps.pyi
typeshed/galaxy/tool_util/cwl/parser.pyi
typeshed/galaxy/tool_util/cwl/representation.pyi
typeshed/galaxy/tool_util/cwl/runtime_actions.pyi
typeshed/galaxy/tool_util/cwl/schema.pyi
typeshed/galaxy/tool_util/deps/__init__.pyi
typeshed/galaxy/tool_util/deps/brew_exts.pyi
typeshed/galaxy/tool_util/deps/brew_util.pyi
typeshed/galaxy/tool_util/deps/commands.pyi
typeshed/galaxy/tool_util/deps/conda_compat.pyi
typeshed/galaxy/tool_util/deps/conda_util.pyi
typeshed/galaxy/tool_util/deps/containers.pyi
typeshed/galaxy/tool_util/deps/dependencies.pyi
typeshed/galaxy/tool_util/deps/docker_util.pyi
typeshed/galaxy/tool_util/deps/dockerfiles.pyi
typeshed/galaxy/tool_util/deps/installable.pyi
typeshed/galaxy/tool_util/deps/requirements.pyi
typeshed/galaxy/tool_util/deps/singularity_util.pyi
typeshed/galaxy/tool_util/deps/views.pyi
typeshed/galaxy/tool_util/deps/container_resolvers/__init__.pyi
typeshed/galaxy/tool_util/deps/container_resolvers/explicit.pyi
typeshed/galaxy/tool_util/deps/container_resolvers/mulled.pyi
typeshed/galaxy/tool_util/deps/mulled/__init__.pyi
typeshed/galaxy/tool_util/deps/mulled/_cli.pyi
typeshed/galaxy/tool_util/deps/mulled/mulled_build.pyi
typeshed/galaxy/tool_util/deps/mulled/mulled_build_channel.pyi
typeshed/galaxy/tool_util/deps/mulled/mulled_build_files.pyi
typeshed/galaxy/tool_util/deps/mulled/mulled_build_tool.pyi
typeshed/galaxy/tool_util/deps/mulled/mulled_search.pyi
typeshed/galaxy/tool_util/deps/mulled/util.pyi
typeshed/galaxy/tool_util/deps/resolvers/__init__.pyi
typeshed/galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.pyi
typeshed/galaxy/tool_util/deps/resolvers/conda.pyi
typeshed/galaxy/tool_util/deps/resolvers/galaxy_packages.pyi
typeshed/galaxy/tool_util/deps/resolvers/homebrew.pyi
typeshed/galaxy/tool_util/deps/resolvers/modules.pyi
typeshed/galaxy/tool_util/deps/resolvers/resolver_mixins.pyi
typeshed/galaxy/tool_util/deps/resolvers/tool_shed_packages.pyi
typeshed/galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.pyi
typeshed/galaxy/tool_util/linters/__init__.pyi
typeshed/galaxy/tool_util/linters/citations.pyi
typeshed/galaxy/tool_util/linters/command.pyi
typeshed/galaxy/tool_util/linters/cwl.pyi
typeshed/galaxy/tool_util/linters/general.pyi
typeshed/galaxy/tool_util/linters/help.pyi
typeshed/galaxy/tool_util/linters/inputs.pyi
typeshed/galaxy/tool_util/linters/outputs.pyi
typeshed/galaxy/tool_util/linters/stdio.pyi
typeshed/galaxy/tool_util/linters/tests.pyi
typeshed/galaxy/tool_util/linters/xml_order.pyi
typeshed/galaxy/tool_util/locations/__init__.pyi
typeshed/galaxy/tool_util/locations/dockstore.pyi
typeshed/galaxy/tool_util/locations/file.pyi
typeshed/galaxy/tool_util/locations/http.pyi
typeshed/galaxy/tool_util/parser/__init__.pyi
typeshed/galaxy/tool_util/parser/cwl.pyi
typeshed/galaxy/tool_util/parser/factory.pyi
typeshed/galaxy/tool_util/parser/interface.pyi
typeshed/galaxy/tool_util/parser/output_actions.pyi
typeshed/galaxy/tool_util/parser/output_collection_def.pyi
typeshed/galaxy/tool_util/parser/output_objects.pyi
typeshed/galaxy/tool_util/parser/util.pyi
typeshed/galaxy/tool_util/parser/xml.pyi
typeshed/galaxy/tool_util/parser/yaml.pyi
typeshed/galaxy/tool_util/verify/__init__.pyi
typeshed/galaxy/tool_util/verify/test_data.pyi
typeshed/galaxy/tool_util/verify/asserts/__init__.pyi
typeshed/galaxy/tool_util/verify/asserts/tabular.pyi
typeshed/galaxy/tool_util/verify/asserts/text.pyi
typeshed/galaxy/tool_util/verify/asserts/xml.pyi
typeshed/galaxy/util/__init__.pyi
typeshed/galaxy/util/aliaspickler.pyi
typeshed/galaxy/util/bunch.pyi
typeshed/galaxy/util/checkers.pyi
typeshed/galaxy/util/compression_utils.pyi
typeshed/galaxy/util/dictifiable.pyi
typeshed/galaxy/util/expressions.pyi
typeshed/galaxy/util/filelock.pyi
typeshed/galaxy/util/hash_util.pyi
typeshed/galaxy/util/heartbeat.pyi
typeshed/galaxy/util/image_util.pyi
typeshed/galaxy/util/inflection.pyi
typeshed/galaxy/util/json.pyi
typeshed/galaxy/util/lazy_process.pyi
typeshed/galaxy/util/object_wrapper.pyi
typeshed/galaxy/util/odict.pyi
typeshed/galaxy/util/oset.pyi
typeshed/galaxy/util/plugin_config.pyi
typeshed/galaxy/util/properties.pyi
typeshed/galaxy/util/simplegraph.pyi
typeshed/galaxy/util/sleeper.pyi
typeshed/galaxy/util/sockets.pyi
typeshed/galaxy/util/specs.pyi
typeshed/galaxy/util/sqlite.pyi
typeshed/galaxy/util/submodules.pyi
typeshed/galaxy/util/topsort.pyi
typeshed/galaxy/util/xml_macros.pyi
typeshed/graphviz/__init__.pyi
typeshed/graphviz/_compat.pyi
typeshed/graphviz/backend.pyi
typeshed/graphviz/dot.pyi
typeshed/graphviz/files.pyi
typeshed/graphviz/lang.pyi
typeshed/graphviz/tools.pyi
typeshed/networkx/__init__.pyi
typeshed/networkx/convert.pyi
typeshed/networkx/convert_matrix.pyi
typeshed/networkx/exception.pyi
typeshed/networkx/relabel.pyi
typeshed/networkx/release.pyi
typeshed/networkx/version.pyi
typeshed/networkx/algorithms/__init__.pyi
typeshed/networkx/algorithms/boundary.pyi
typeshed/networkx/algorithms/bridges.pyi
typeshed/networkx/algorithms/chains.pyi
typeshed/networkx/algorithms/chordal.pyi
typeshed/networkx/algorithms/clique.pyi
typeshed/networkx/algorithms/cluster.pyi
typeshed/networkx/algorithms/communicability_alg.pyi
typeshed/networkx/algorithms/core.pyi
typeshed/networkx/algorithms/covering.pyi
typeshed/networkx/algorithms/cuts.pyi
typeshed/networkx/algorithms/cycles.pyi
typeshed/networkx/algorithms/dag.pyi
typeshed/networkx/algorithms/distance_measures.pyi
typeshed/networkx/algorithms/distance_regular.pyi
typeshed/networkx/algorithms/dominance.pyi
typeshed/networkx/algorithms/dominating.pyi
typeshed/networkx/algorithms/efficiency.pyi
typeshed/networkx/algorithms/euler.pyi
typeshed/networkx/algorithms/graphical.pyi
typeshed/networkx/algorithms/hierarchy.pyi
typeshed/networkx/algorithms/hybrid.pyi
typeshed/networkx/algorithms/isolate.pyi
typeshed/networkx/algorithms/link_prediction.pyi
typeshed/networkx/algorithms/lowest_common_ancestors.pyi
typeshed/networkx/algorithms/matching.pyi
typeshed/networkx/algorithms/minors.pyi
typeshed/networkx/algorithms/mis.pyi
typeshed/networkx/algorithms/reciprocity.pyi
typeshed/networkx/algorithms/richclub.pyi
typeshed/networkx/algorithms/similarity.pyi
typeshed/networkx/algorithms/simple_paths.pyi
typeshed/networkx/algorithms/smetric.pyi
typeshed/networkx/algorithms/structuralholes.pyi
typeshed/networkx/algorithms/swap.pyi
typeshed/networkx/algorithms/threshold.pyi
typeshed/networkx/algorithms/tournament.pyi
typeshed/networkx/algorithms/triads.pyi
typeshed/networkx/algorithms/vitality.pyi
typeshed/networkx/algorithms/voronoi.pyi
typeshed/networkx/algorithms/wiener.pyi
typeshed/networkx/algorithms/approximation/__init__.pyi
typeshed/networkx/algorithms/approximation/clique.pyi
typeshed/networkx/algorithms/approximation/clustering_coefficient.pyi
typeshed/networkx/algorithms/approximation/connectivity.pyi
typeshed/networkx/algorithms/approximation/dominating_set.pyi
typeshed/networkx/algorithms/approximation/independent_set.pyi
typeshed/networkx/algorithms/approximation/kcomponents.pyi
typeshed/networkx/algorithms/approximation/matching.pyi
typeshed/networkx/algorithms/approximation/ramsey.pyi
typeshed/networkx/algorithms/approximation/steinertree.pyi
typeshed/networkx/algorithms/approximation/vertex_cover.pyi
typeshed/networkx/algorithms/assortativity/__init__.pyi
typeshed/networkx/algorithms/assortativity/connectivity.pyi
typeshed/networkx/algorithms/assortativity/correlation.pyi
typeshed/networkx/algorithms/assortativity/mixing.pyi
typeshed/networkx/algorithms/assortativity/neighbor_degree.pyi
typeshed/networkx/algorithms/assortativity/pairs.pyi
typeshed/networkx/algorithms/bipartite/__init__.pyi
typeshed/networkx/algorithms/bipartite/basic.pyi
typeshed/networkx/algorithms/bipartite/centrality.pyi
typeshed/networkx/algorithms/bipartite/cluster.pyi
typeshed/networkx/algorithms/bipartite/covering.pyi
typeshed/networkx/algorithms/bipartite/edgelist.pyi
typeshed/networkx/algorithms/bipartite/generators.pyi
typeshed/networkx/algorithms/bipartite/matching.pyi
typeshed/networkx/algorithms/bipartite/matrix.pyi
typeshed/networkx/algorithms/bipartite/projection.pyi
typeshed/networkx/algorithms/bipartite/redundancy.pyi
typeshed/networkx/algorithms/bipartite/spectral.pyi
typeshed/networkx/algorithms/centrality/betweenness.pyi
typeshed/networkx/algorithms/centrality/betweenness_subset.pyi
typeshed/networkx/algorithms/centrality/closeness.pyi
typeshed/networkx/algorithms/centrality/current_flow_betweenness.pyi
typeshed/networkx/algorithms/centrality/current_flow_betweenness_subset.pyi
typeshed/networkx/algorithms/centrality/current_flow_closeness.pyi
typeshed/networkx/algorithms/centrality/degree_alg.pyi
typeshed/networkx/algorithms/centrality/dispersion.pyi
typeshed/networkx/algorithms/centrality/eigenvector.pyi
typeshed/networkx/algorithms/centrality/flow_matrix.pyi
typeshed/networkx/algorithms/centrality/harmonic.pyi
typeshed/networkx/algorithms/centrality/katz.pyi
typeshed/networkx/algorithms/centrality/load.pyi
typeshed/networkx/algorithms/centrality/reaching.pyi
typeshed/networkx/algorithms/centrality/subgraph_alg.pyi
typeshed/networkx/algorithms/coloring/__init__.pyi
typeshed/networkx/algorithms/coloring/greedy_coloring.pyi
typeshed/networkx/algorithms/coloring/greedy_coloring_with_interchange.pyi
typeshed/networkx/algorithms/community/__init__.pyi
typeshed/networkx/algorithms/community/asyn_fluidc.pyi
typeshed/networkx/algorithms/community/centrality.pyi
typeshed/networkx/algorithms/community/community_generators.pyi
typeshed/networkx/algorithms/community/community_utils.pyi
typeshed/networkx/algorithms/community/kclique.pyi
typeshed/networkx/algorithms/community/kernighan_lin.pyi
typeshed/networkx/algorithms/community/label_propagation.pyi
typeshed/networkx/algorithms/community/quality.pyi
typeshed/networkx/algorithms/components/__init__.pyi
typeshed/networkx/algorithms/components/attracting.pyi
typeshed/networkx/algorithms/components/biconnected.pyi
typeshed/networkx/algorithms/components/connected.pyi
typeshed/networkx/algorithms/components/semiconnected.pyi
typeshed/networkx/algorithms/components/strongly_connected.pyi
typeshed/networkx/algorithms/components/weakly_connected.pyi
typeshed/networkx/algorithms/connectivity/__init__.pyi
typeshed/networkx/algorithms/connectivity/connectivity.pyi
typeshed/networkx/algorithms/connectivity/cuts.pyi
typeshed/networkx/algorithms/connectivity/disjoint_paths.pyi
typeshed/networkx/algorithms/connectivity/edge_augmentation.pyi
typeshed/networkx/algorithms/connectivity/edge_kcomponents.pyi
typeshed/networkx/algorithms/connectivity/kcomponents.pyi
typeshed/networkx/algorithms/connectivity/kcutsets.pyi
typeshed/networkx/algorithms/connectivity/stoerwagner.pyi
typeshed/networkx/algorithms/connectivity/utils.pyi
typeshed/networkx/algorithms/flow/__init__.pyi
typeshed/networkx/algorithms/flow/boykovkolmogorov.pyi
typeshed/networkx/algorithms/flow/capacityscaling.pyi
typeshed/networkx/algorithms/flow/dinitz_alg.pyi
typeshed/networkx/algorithms/flow/edmondskarp.pyi
typeshed/networkx/algorithms/flow/gomory_hu.pyi
typeshed/networkx/algorithms/flow/maxflow.pyi
typeshed/networkx/algorithms/flow/mincost.pyi
typeshed/networkx/algorithms/flow/networksimplex.pyi
typeshed/networkx/algorithms/flow/preflowpush.pyi
typeshed/networkx/algorithms/flow/shortestaugmentingpath.pyi
typeshed/networkx/algorithms/flow/utils.pyi
typeshed/networkx/algorithms/isomorphism/__init__.pyi
typeshed/networkx/algorithms/isomorphism/isomorph.pyi
typeshed/networkx/algorithms/isomorphism/isomorphvf2.pyi
typeshed/networkx/algorithms/isomorphism/matchhelpers.pyi
typeshed/networkx/algorithms/isomorphism/temporalisomorphvf2.pyi
typeshed/networkx/algorithms/isomorphism/vf2userfunc.pyi
typeshed/networkx/algorithms/link_analysis/__init__.pyi
typeshed/networkx/algorithms/link_analysis/hits_alg.pyi
typeshed/networkx/algorithms/link_analysis/pagerank_alg.pyi
typeshed/networkx/algorithms/operators/__init__.pyi
typeshed/networkx/algorithms/operators/all.pyi
typeshed/networkx/algorithms/operators/binary.pyi
typeshed/networkx/algorithms/operators/product.pyi
typeshed/networkx/algorithms/operators/unary.pyi
typeshed/networkx/algorithms/shortest_paths/__init__.pyi
typeshed/networkx/algorithms/shortest_paths/astar.pyi
typeshed/networkx/algorithms/shortest_paths/dense.pyi
typeshed/networkx/algorithms/shortest_paths/generic.pyi
typeshed/networkx/algorithms/shortest_paths/unweighted.pyi
typeshed/networkx/algorithms/shortest_paths/weighted.pyi
typeshed/networkx/algorithms/traversal/__init__.pyi
typeshed/networkx/algorithms/traversal/beamsearch.pyi
typeshed/networkx/algorithms/traversal/breadth_first_search.pyi
typeshed/networkx/algorithms/traversal/depth_first_search.pyi
typeshed/networkx/algorithms/traversal/edgedfs.pyi
typeshed/networkx/algorithms/tree/__init__.pyi
typeshed/networkx/algorithms/tree/branchings.pyi
typeshed/networkx/algorithms/tree/coding.pyi
typeshed/networkx/algorithms/tree/mst.pyi
typeshed/networkx/algorithms/tree/operations.pyi
typeshed/networkx/algorithms/tree/recognition.pyi
typeshed/networkx/classes/__init__.pyi
typeshed/networkx/classes/coreviews.pyi
typeshed/networkx/classes/digraph.pyi
typeshed/networkx/classes/filters.pyi
typeshed/networkx/classes/function.pyi
typeshed/networkx/classes/graph.pyi
typeshed/networkx/classes/graphviews.pyi
typeshed/networkx/classes/multidigraph.pyi
typeshed/networkx/classes/multigraph.pyi
typeshed/networkx/classes/ordered.pyi
typeshed/networkx/classes/reportviews.pyi
typeshed/networkx/drawing/__init__.pyi
typeshed/networkx/drawing/layout.pyi
typeshed/networkx/drawing/nx_agraph.pyi
typeshed/networkx/drawing/nx_pydot.pyi
typeshed/networkx/drawing/nx_pylab.pyi
typeshed/networkx/generators/atlas.pyi
typeshed/networkx/generators/classic.pyi
typeshed/networkx/generators/community.pyi
typeshed/networkx/generators/degree_seq.pyi
typeshed/networkx/generators/directed.pyi
typeshed/networkx/generators/duplication.pyi
typeshed/networkx/generators/ego.pyi
typeshed/networkx/generators/expanders.pyi
typeshed/networkx/generators/geometric.pyi
typeshed/networkx/generators/intersection.pyi
typeshed/networkx/generators/joint_degree_seq.pyi
typeshed/networkx/generators/lattice.pyi
typeshed/networkx/generators/line.pyi
typeshed/networkx/generators/mycielski.pyi
typeshed/networkx/generators/nonisomorphic_trees.pyi
typeshed/networkx/generators/random_clustered.pyi
typeshed/networkx/generators/random_graphs.pyi
typeshed/networkx/generators/small.pyi
typeshed/networkx/generators/social.pyi
typeshed/networkx/generators/stochastic.pyi
typeshed/networkx/generators/trees.pyi
typeshed/networkx/generators/triads.pyi
typeshed/networkx/linalg/__init__.pyi
typeshed/networkx/linalg/algebraicconnectivity.pyi
typeshed/networkx/linalg/attrmatrix.pyi
typeshed/networkx/linalg/graphmatrix.pyi
typeshed/networkx/linalg/laplacianmatrix.pyi
typeshed/networkx/linalg/modularitymatrix.pyi
typeshed/networkx/linalg/spectrum.pyi
typeshed/networkx/readwrite/__init__.pyi
typeshed/networkx/readwrite/adjlist.pyi
typeshed/networkx/readwrite/edgelist.pyi
typeshed/networkx/readwrite/gexf.pyi
typeshed/networkx/readwrite/gml.pyi
typeshed/networkx/readwrite/gpickle.pyi
typeshed/networkx/readwrite/graph6.pyi
typeshed/networkx/readwrite/graphml.pyi
typeshed/networkx/readwrite/leda.pyi
typeshed/networkx/readwrite/multiline_adjlist.pyi
typeshed/networkx/readwrite/nx_shp.pyi
typeshed/networkx/readwrite/nx_yaml.pyi
typeshed/networkx/readwrite/p2g.pyi
typeshed/networkx/readwrite/pajek.pyi
typeshed/networkx/readwrite/sparse6.pyi
typeshed/networkx/readwrite/json_graph/__init__.pyi
typeshed/networkx/readwrite/json_graph/adjacency.pyi
typeshed/networkx/readwrite/json_graph/cytoscape.pyi
typeshed/networkx/readwrite/json_graph/jit.pyi
typeshed/networkx/readwrite/json_graph/node_link.pyi
typeshed/networkx/readwrite/json_graph/tree.pyi
typeshed/networkx/tests/__init__.pyi
typeshed/networkx/tests/test.pyi
typeshed/networkx/utils/__init__.pyi
typeshed/networkx/utils/contextmanagers.pyi
typeshed/networkx/utils/decorators.pyi
typeshed/networkx/utils/heaps.pyi
typeshed/networkx/utils/misc.pyi
typeshed/networkx/utils/random_sequence.pyi
typeshed/networkx/utils/rcm.pyi
typeshed/networkx/utils/union_find.pyi
typeshed/prov/__init__.pyi
typeshed/prov/constants.pyi
typeshed/prov/graph.pyi
typeshed/prov/identifier.pyi
typeshed/prov/model.pyi
typeshed/prov/serializers/__init__.pyi
typeshed/prov/serializers/provjson.pyi
typeshed/prov/serializers/provn.pyi
typeshed/prov/serializers/provrdf.pyi
typeshed/prov/serializers/provxml.pyi
typeshed/rdflib/__init__.pyi
typeshed/rdflib/container.pyi
typeshed/rdflib/events.pyi
typeshed/rdflib/exceptions.pyi
typeshed/rdflib/graph.pyi
typeshed/rdflib/parser.pyi
typeshed/rdflib/paths.pyi
typeshed/rdflib/plugin.pyi
typeshed/rdflib/query.pyi
typeshed/rdflib/serializer.pyi
typeshed/rdflib/store.pyi
typeshed/rdflib/term.pyi
typeshed/rdflib/util.pyi
typeshed/rdflib/namespace/_CSVW.pyi
typeshed/rdflib/namespace/_DC.pyi
typeshed/rdflib/namespace/_DCAT.pyi
typeshed/rdflib/namespace/_DCTERMS.pyi
typeshed/rdflib/namespace/_DOAP.pyi
typeshed/rdflib/namespace/_FOAF.pyi
typeshed/rdflib/namespace/_ODRL2.pyi
typeshed/rdflib/namespace/_ORG.pyi
typeshed/rdflib/namespace/_OWL.pyi
typeshed/rdflib/namespace/_PROF.pyi
typeshed/rdflib/namespace/_PROV.pyi
typeshed/rdflib/namespace/_QB.pyi
typeshed/rdflib/namespace/_RDF.pyi
typeshed/rdflib/namespace/_RDFS.pyi
typeshed/rdflib/namespace/_SDO.pyi
typeshed/rdflib/namespace/_SH.pyi
typeshed/rdflib/namespace/_SKOS.pyi
typeshed/rdflib/namespace/_SOSA.pyi
typeshed/rdflib/namespace/_SSN.pyi
typeshed/rdflib/namespace/_TIME.pyi
typeshed/rdflib/namespace/_VOID.pyi
typeshed/rdflib/namespace/_XSD.pyi
typeshed/rdflib/namespace/__init__.pyi
typeshed/rdflib/plugins/__init__.pyi
typeshed/rdflib/plugins/parsers/__init__.pyi
typeshed/rdflib/plugins/parsers/notation3.pyi
typeshed/shellescape/__init__.pyi
typeshed/shellescape/main.pyi
typeshed/urllib/parse.pyi